PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1158151g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | Nin-like | ||||||||
Protein Properties | Length: 177aa MW: 19692.9 Da PI: 4.8897 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 62.2 | 9.2e-20 | 130 | 175 | 2 | 47 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 +k+++ e+l++yF+lp + AA+eLg++lT+LK+ CR+yGI+ WP+ PDK_30s1158151g001 130 TKNMTKEELEQYFDLPRERAAQELGISLTTLKKLCRKYGIPCWPYK 175 89******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.392 | 120 | 177 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.1E-18 | 132 | 176 | IPR003035 | RWP-RK domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-4 | 148 | 169 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MDDSEPYDPD GDTHRYLYLP ESPSDPLISS GPTFSWEYEL FRLSSPPFPN NDVGLITSNQ 60 AAAPMQANVP SRTIDNNESL IRESDLLPET DFGGSSQLSS AYATGTEGRG AGLTGPKKKK 120 TGIAAQRERT KNMTKEELEQ YFDLPRERAA QELGISLTTL KKLCRKYGIP CWPYKRP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026657665.1 | 4e-92 | uncharacterized protein LOC113461822, partial | ||||
TrEMBL | A0A3Q0HWD8 | 9e-91 | A0A3Q0HWD8_PHODC; uncharacterized protein LOC113461822 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 1e-11 | RWP-RK domain-containing protein |