PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1148001g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HB-other

Protein Properties

Length: 338aa MW: 38264.1 Da PI: 9.6483

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1148001g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.4e-18	26	82	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + kR t+ q+e+Le+++++++yps+ ++ + Ak++gL+e+qV+ WF+ rR k+kk PDK_30s1148001g001 26 KTKRKMKTPAQVEALEKFYNEHKYPSELMKLQFAKQIGLSEKQVSGWFCHRRLKDKK 82 679****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-18	17	82	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.082	23	83	IPR001356	Homeobox domain
SMART	SM00389	1.0E-17	25	87	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.34E-17	25	91	IPR009057	Homeodomain-like
CDD	cd00086	2.11E-16	26	82	No hit	No description
Pfam	PF00046	5.2E-16	26	82	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MSGSRYRPDT GSQDVYYKEK TVSPEKTKRK MKTPAQVEAL EKFYNEHKYP SELMKLQFAK 60 QIGLSEKQVS GWFCHRRLKD KKLMQGEVYA NGKHYNGLVH DHTSGLRQES CSSTKQGDRY 120 FDLKEVQSKR SYGQTSSSAG LALEQRGRQF NVGCHANADD RSSGSSSASQ GRLLQQVEDP 180 PSLVSSGYPS QGDNYMLMNT RGVKSRGPMM HSRCSYFQVE NEHPAISSVK RKLGGHYCED 240 GPPLGVNFDP LPPDIVRCAR YAIPYQTERY GAYHTVPVWY RSYLISFPIF LAEPYYVGDS 300 MLHGASCIPR IAKETKKKES STKSKFDRSF VMSTNGYL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008799104.1	1e-178	uncharacterized protein LOC103713842
TrEMBL	A0A2H3YI06	1e-177	A0A2H3YI06_PHODC; uncharacterized protein LOC103713842
STRING	XP_008799104.1	1e-178	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25496	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	5e-41	HB-other family protein