PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1140711g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB

Protein Properties

Length: 280aa MW: 31206.3 Da PI: 8.858

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1140711g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.3	3.5e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv +++++G+g+Wk+++ g+ R+ k+c++rw +yl PDK_30s1140711g001 14 KGPWTPEEDLILVSYIQEHGPGNWKAVPTNTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	50.1	6.6e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++l +++ ++lG++ W++Ia++++ Rt++++k++w+++l PDK_30s1140711g001 67 RGNFTEQEEKLMIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.796	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	2.62E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	5.9E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	9.2E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.11E-11	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.3E-24	65	117	IPR009057	Homeodomain-like
SMART	SM00717	3.1E-15	66	114	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.838	66	116	IPR017930	Myb domain
Pfam	PF00249	8.3E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.14E-10	69	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MGRPPCCDKV GVKKGPWTPE EDLILVSYIQ EHGPGNWKAV PTNTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TEQEEKLMIH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLKKLQ 120 AGNDRAFESR LQTDIHMAKQ ALREALSLGK TSCPTELKPS NGSCSLTRPT QPATPSSTTT 180 YASSTENISR LLEGWMKNPP KPRAARANSE STTQHSINKA AETDSSSLLN LESSTPDMSE 240 TSLFQCESKP SSEAQVPLSL LETWLLDEGF GQGENPKNIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	3e-26	14	116	4	105	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	4e-26	14	116	27	128	MYB TRANSFORMING PROTEIN
1mse_C	3e-26	14	116	4	105	C-Myb DNA-Binding Domain
1msf_C	3e-26	14	116	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008784211.1	1e-172	myb-related protein 306
Swissprot	P81392	1e-110	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A2H3XIA4	1e-171	A0A2H3XIA4_PHODC; myb-related protein 306
STRING	XP_008784211.1	1e-171	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	2e-94	myb domain protein 94

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]