PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1135241g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 308aa    MW: 34566.1 Da    PI: 6.677
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1135241g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000431591981255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         RR++i  ++ +L+ l+P +    +k   Ka +L   ++Y++sLq
  PDK_30s1135241g002 159 RREKIGVRMKTLQGLVPGC----DKVTGKAVMLDAIINYVRSLQ 198
                         9*****************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.08147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.18E-5159202No hitNo description
SuperFamilySSF474595.23E-11159211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-11160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEAFSYQQHY PFLLDSPVFP TNPFDLLLPQ QQVGETSNIS SSSFPSYFSP EAILEVSATD  60
ARAHQSSSFL DTSSKAPSIE SETTLSSVVV EPRDENVRKQ QGSMGKKRKN GYGTCLSSGR  120
SKRKPHGELK GKEDKKPKDD DSKATKACEE PPAGYIYARR EKIGVRMKTL QGLVPGCDKV  180
TGKAVMLDAI INYVRSLQNQ VEFLSMELAS VYPTLYDFGV DIDDSMNELE KMGSIPQEVS  240
LVNQSTHIQP PSFENAANNY QLEDPSVPLL LHYQQPTAFS QVFLLLRWLI YLKQNFTRIT  300
KQKPYPCF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121137KRKPHGELKGKEDKKPK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026662836.11e-139transcription factor bHLH137-like
TrEMBLA0A3Q0I7591e-138A0A3Q0I759_PHODC; transcription factor bHLH137-like
STRINGXP_008791059.11e-122(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.27e-31bHLH family protein