PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1122501g012
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 359aa    MW: 39435.8 Da    PI: 10.2419
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1122501g012genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.8e-32293350359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  PDK_30s1122501g012 293 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHT 350
                         9************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.2E-18244289IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.1E-34279350IPR003657WRKY domain
PROSITE profilePS5081129.998286349IPR003657WRKY domain
SuperFamilySSF1182904.32E-27289350IPR003657WRKY domain
SMARTSM007746.9E-39291351IPR003657WRKY domain
PfamPF031061.9E-27293349IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEQVEEANRA AVESCQSLLS LLSQSQDQVQ YRNLMAETGE AVSRFKRVAS MLSDGVGHAR  60
ARIAKRVQSP FNHKVLLDHP LALSVMEPSP KPLQLLPRSL SDTSAPELDS SAKNPQQLTQ  120
NQKILLENPG LDLNSSSSSR SVLQLAPQGP PTAAHLQFLQ QQQSNHRFQL QQQIKLQADL  180
FRRSNSGINL KFESSSCTPT VSSARSFLSS LSMDGSVAGL DGKAFHLIGG AAASDPVSTH  240
LPPKRRCSGR GEDGSGKCAT TGRCHCSKRR KLRIKRSIKV PAISNKLADI PPDEYSWRKY  300
GQKPIKGSPH PRGYYKCSSM RGCPARKHVE RCLEDPSMLI VTYEGEHNHT RLLAQSAQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20284349771WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008786100.10.0protein WRKY1
RefseqXP_008786101.10.0protein WRKY1
RefseqXP_008786102.10.0protein WRKY1
RefseqXP_026659415.10.0protein WRKY1
SwissprotQ9SR071e-105WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLA0A2H3XMV90.0A0A2H3XMV9_PHODC; protein WRKY1
STRINGXP_008786100.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.16e-84WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]