PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1122121g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HRT-like

Protein Properties

Length: 649aa MW: 73776.1 Da PI: 7.6765

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1122121g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	52.1	1.1e-16	536	566	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+++ G vC+++PvkgRKRCeeHKG+Ri PDK_30s1122121g002 536 ICGVAISGGLVCRNKPVKGRKRCEEHKGKRI 566 8*****************************7 PP
2	HRT-like	47.3	3.5e-15	586	616	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CG+ edGsvC++ +++g+KRCe HKG+Ri PDK_30s1122121g002 586 VCGFVSEDGSVCSELAIHGKKRCELHKGRRI 616 7*****************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.70.160.11	1.9E-18	22	85	No hit	No description
SuperFamily	SSF53335	4.15E-8	26	87	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence Send to blast
MAGSPSSDQH SQNSSQSKKR VKSDETIVLS TAPEDAPTHW QQTLLYLYEP IELKQDQIIE 60 GSVTLTQSME NPRFLNIHLA YSYISQTLKV LYELASFVNP VMLEIHPVPS MRCEIIDHEL 120 STYTIGIIGW GLIALHDASI AGDGRWEKMS ARLKREECLR TKHDSLFSKW KRCMCTAHAK 180 EKTDSQWESY SPLKPEKTDS QWESSSPLKP VLKKTLRISW ISLLVVRANY FSYLHCDTFY 240 IMLECLTCLW EEFSISFLYR PIPPGYRVYC TNLISYWMHP YDTVFGQEIH TYSDMVQVLI 300 GPSDWEDYSL GKDGVERYRI HNIPIYSACP GLYELGIASN LGVEDNRTRR RASEDVIVVY 360 LGQADNVRTR LQQYGREGAH LDHRNLIISA DKIEFPFTQS GPGLFKEIFS RGHSIMFRWV 420 PMSSKKEAEK TEASLLKVFD YAWNKRGNGV CRREEILLKL DNAATSPISS AHRKLQQWKH 480 TVFDKKEGIK INGSMPLDEV GSSDGRKAFL PEVLKFVTFR PRLVQGGDGI PGDHDICGVA 540 ISGGLVCRNK PVKGRKRCEE HKGKRITGID KVTGGEVTTT SEKSSVCGFV SEDGSVCSEL 600 AIHGKKRCEL HKGRRIFEPH LHISSDNKLQ SQLVQETYDA DQEYNICGV

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence Send to blast

MAGSPSSDQH SQNSSQSKKR VKSDETIVLS TAPEDAPTHW QQTLLYLYEP IELKQDQIIE  60
GSVTLTQSME NPRFLNIHLA YSYISQTLKV LYELASFVNP VMLEIHPVPS MRCEIIDHEL  120
STYTIGIIGW GLIALHDASI AGDGRWEKMS ARLKREECLR TKHDSLFSKW KRCMCTAHAK  180
EKTDSQWESY SPLKPEKTDS QWESSSPLKP VLKKTLRISW ISLLVVRANY FSYLHCDTFY  240
IMLECLTCLW EEFSISFLYR PIPPGYRVYC TNLISYWMHP YDTVFGQEIH TYSDMVQVLI  300
GPSDWEDYSL GKDGVERYRI HNIPIYSACP GLYELGIASN LGVEDNRTRR RASEDVIVVY  360
LGQADNVRTR LQQYGREGAH LDHRNLIISA DKIEFPFTQS GPGLFKEIFS RGHSIMFRWV  420
PMSSKKEAEK TEASLLKVFD YAWNKRGNGV CRREEILLKL DNAATSPISS AHRKLQQWKH  480
TVFDKKEGIK INGSMPLDEV GSSDGRKAFL PEVLKFVTFR PRLVQGGDGI PGDHDICGVA  540
ISGGLVCRNK PVKGRKRCEE HKGKRITGID KVTGGEVTTT SEKSSVCGFV SEDGSVCSEL  600
AIHGKKRCEL HKGRRIFEPH LHISSDNKLQ SQLVQETYDA DQEYNICGV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019701325.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A199W6Y2	1e-121	A0A199W6Y2_ANACO; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7948	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	3e-69	effector of transcription2