PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1103751g025
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family M-type_MADS
Protein Properties Length: 227aa    MW: 26097.6 Da    PI: 9.0004
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1103751g025genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.66.6e-181151343
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        i n+s r  tf kRr+g++KK +EL +LCd++++v++++++
  PDK_30s1103751g025 11 IANDSTRRATFKKRRKGLMKKVSELATLCDVKACVVVYGPQ 51
                        89*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.1E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.521149IPR002100Transcription factor, MADS-box
CDDcd002665.15E-34285No hitNo description
PRINTSPR004042.8E-10323IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.16E-25393IPR002100Transcription factor, MADS-box
PfamPF003194.4E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MARKKVNLAW IANDSTRRAT FKKRRKGLMK KVSELATLCD VKACVVVYGP QEPQPEVWPS  60
VPEVTRVLAR FKSMPEMEQC KKMMNQEGFL RQCVTKLQEQ LRKHERENRE LQTMLLILAW  120
MVEMKVKAVQ ERIELVRAQM ASRMVEASSS QVAPVAMEGT GLGQGPMPVM KEKTPMEAAM  180
EALQRQNWFM EVMNPNDNLI FGGGEEMVQP YVDHTNSWLD ACYFLLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVNLAWIANDSTRRATFKKRR
22125KKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008800341.11e-163agamous-like MADS-box protein AGL80
TrEMBLA0A2H3YKW11e-162A0A2H3YKW1_PHODC; agamous-like MADS-box protein AGL80
STRINGXP_008800341.11e-163(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-40AGAMOUS-like 80