PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1094241g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | Nin-like | ||||||||
Protein Properties | Length: 192aa MW: 21971.5 Da PI: 10.0278 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 88.6 | 5.1e-28 | 48 | 98 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek +++e++s++F++pi++AAkeL+v++T+LKr+CR++GI+RWPhRk+ksl PDK_30s1094241g001 48 EKALTFEEVSRCFYMPITQAAKELNVGVTLLKRKCRKLGIPRWPHRKLKSL 98 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.677 | 37 | 119 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.2E-22 | 51 | 98 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
APFSVFDGEN GFWDDMKCGT ENKEKALVCD GEKRGQKKMR KGERSREEKA LTFEEVSRCF 60 YMPITQAAKE LNVGVTLLKR KCRKLGIPRW PHRKLKSLQT LIKNVKEHGG EEGDVGDAQL 120 VTSATAILEQ ERKLMEKEPA MQLEEKTKRL RQACFKANYK KRRLAALEES QESASPDYIF 180 LQKAMMKIKS AA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026658339.1 | 1e-136 | protein RKD1-like | ||||
Swissprot | Q9FGD1 | 2e-39 | RKD3_ARATH; Protein RKD3 | ||||
TrEMBL | A0A3Q0HV38 | 1e-135 | A0A3Q0HV38_PHODC; protein RKD1-like | ||||
STRING | XP_008787160.1 | 1e-135 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 8e-42 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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