PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1091161g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 207aa MW: 23931.7 Da PI: 9.3597 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.6 | 1.2e-16 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i ++ r++++ kR++g+lKK +ELS+LCd++++ ii+++ PDK_30s1091161g001 11 IADDAARKTSLKKRKKGLLKKVQELSILCDVDACAIIYGP 50 788999********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 5.36E-17 | 1 | 57 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.5E-15 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.39 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-15 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-8 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MSRTSMKLQL IADDAARKTS LKKRKKGLLK KVQELSILCD VDACAIIYGP GERSPEKQKM 60 MNQEEFLYQK MRKLVDQLHK QEFENREMEK KLKMYEALRT GNFNDLDIEQ AISLSMMIEM 120 KLKKIYEKMD AIRKHQEMAW VDGAVQEGGN SAGLNAPWEN NPTEQGREIL QRQKQMMDTM 180 ILARTNETNQ PSPGPANPWM ASFFPSN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 25 | KKRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010914731.1 | 1e-100 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2H4A1E8 | 1e-63 | A0A2H4A1E8_PHODC; agamous-like MADS-box protein AGL80 | ||||
STRING | XP_008812533.1 | 1e-106 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP50755 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 3e-16 | AGAMOUS-like 80 |