PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1086881g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 189aa    MW: 21540.4 Da    PI: 8.3395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1086881g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-134187455
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                        +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  PDK_30s1086881g001 41 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITELQ 87
                        799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.133786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-2038104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.67E-134091No hitNo description
Gene3DG3DSA:4.10.280.103.0E-1941101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-114187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-174392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.55E-5120185No hitNo description
PROSITE profilePS516718.619123189IPR002912ACT domain
CDDcd048734.12E-4136188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MESEHSDVEA PCKEDRPGAM EERRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL  60
RAVVPNISKM DKASLLGDAI SYITELQKKL KEMETEKERC PESASRRAQC PEIDVQAVHD  120
EVIVRVSCPM DTHPVSRVIQ VFKESQINVV DSKVSASNEA VLHTFVVKSQ PGSEQLTRDK  180
LVAALSRER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-323597264Transcription factor MYC2
5gnj_B8e-323597264Transcription factor MYC2
5gnj_E8e-323597264Transcription factor MYC2
5gnj_F8e-323597264Transcription factor MYC2
5gnj_G8e-323597264Transcription factor MYC2
5gnj_I8e-323597264Transcription factor MYC2
5gnj_M8e-323597264Transcription factor MYC2
5gnj_N8e-323597264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12230RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008790159.11e-131transcription factor bHLH13-like
SwissprotA0A3Q7ELQ24e-92MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A2H3ZQG21e-130A0A2H3ZQG2_PHODC; transcription factor bHLH13-like
STRINGXP_008790159.11e-130(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.12e-59ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]