PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1084291g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 336aa    MW: 37356 Da    PI: 6.6589
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1084291g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08123143526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C++f++ G Ck+Gd C +aHg
  PDK_30s1084291g001 123 ACPDFRK-GNCKRGDACEYAHG 143
                         7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.5E-6118144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.92119145IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-6123143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-5123145IPR000571Zinc finger, CCCH-type
SMARTSM0035612153176IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.343153177IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MMMMGERSHH NPTVHVPPWT PFDDPAAGVA YNLPMSGVAG AGGGDCSPYT LAEPSLAALQ  60
RFLPCNEIYA AGEDTDESEP ADAPVDAYSC DEFRMYEFKC PYAHPGEKAR RRDPRKFHYS  120
GTACPDFRKG NCKRGDACEY AHGVFECWLH PARYRTQPCK DGTACRRRVC FFAHTPEQLR  180
VLPQQQQQHQ QLQQTPRTLS ATDSYDGSPL RQQHTVECYF SKNLVSSSPS STLVSSSPSS  240
TLISPPMSPP SESPPMSPRG VQAVRRASWP MNELLASLWQ FQLSKEEEPV ERVESGRALR  300
ARMFERLSKD SILVQGESTP MAAPAPDVGW VSELVK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925500.10.0zinc finger CCCH domain-containing protein 2
SwissprotQ9FU278e-86C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A2H3Y6C61e-164A0A2H3Y6C6_PHODC; zinc finger CCCH domain-containing protein 2-like
STRINGXP_008794080.11e-165(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.18e-69C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]