PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1068381g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 170aa    MW: 18919.6 Da    PI: 8.9244
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1068381g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.94.8e-102145126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        +kt+lC+ f   G C+ G++C+FaHg
  PDK_30s1068381g001 21 FKTRLCQKFKT-GSCPWGNNCNFAHG 45
                        79*********.*************8 PP
2zf-CCCH26.88.9e-0975100227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         k e+Cr f+++  C+y drC++ H++
  PDK_30s1068381g001  75 KNEICRKFSKGEVCPYEDRCTYLHVQ 100
                         679*******66************86 PP
3zf-CCCH30.46.8e-10134158226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         k ++C  +  tG+C++G+rC FaHg
  PDK_30s1068381g001 134 KAKICYKWETTGHCSFGERCIFAHG 158
                         7789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-91851IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.7132047IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-52046IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-162053IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-72145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-972102IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-473100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2373101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-773102IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-677100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-10130159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-8132159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943132160IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-6132159IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-7134158IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MPHPPNPQTN PPIRGTSCMF FKTRLCQKFK TGSCPWGNNC NFAHGIEELR QPPPNWKALV  60
AEGQVNGNDQ QRMRKNEICR KFSKGEVCPY EDRCTYLHVQ RENLGMAMGS MAGPGSIGGF  120
SSAADCNGSN QKPKAKICYK WETTGHCSFG ERCIFAHGIA VIQKDRFSTS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792071.11e-119zinc finger CCCH domain-containing protein 39-like
SwissprotQ84UQ31e-31C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A2H3Y2421e-117A0A2H3Y242_PHODC; zinc finger CCCH domain-containing protein 39-like
STRINGXP_008792071.11e-118(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2293446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.15e-29C3H family protein