PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1067081g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 347aa    MW: 37821.5 Da    PI: 5.4414
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1067081g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591e-181461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg WT+eEd +l  +++q+G+++W++I++  g+ R++k+c++rw +yl
  PDK_30s1067081g001 14 RGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
                        89********************************************97 PP
2Myb_DNA-binding44.53.6e-1468123246
                         SSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqk 46 
                         g +++ E++ +v+++   G++            tW++Ia+ ++ gRt++++k++w++
  PDK_30s1067081g001  68 GEFSESEEQTIVKLHSVVGNRqcplpylrdgymTWSLIAAQLP-GRTDNDVKNHWNT 123
                         789****************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-25564IPR009057Homeodomain-like
PROSITE profilePS5129426.617965IPR017930Myb domain
SuperFamilySSF466899.71E-2511121IPR009057Homeodomain-like
SMARTSM007176.0E-141363IPR001005SANT/Myb domain
PfamPF002493.5E-171461IPR001005SANT/Myb domain
CDDcd001679.94E-131761No hitNo description
Gene3DG3DSA:1.10.10.604.6E-2165129IPR009057Homeodomain-like
SMARTSM007173.8E-966127IPR001005SANT/Myb domain
PROSITE profilePS5129413.4566129IPR017930Myb domain
PfamPF002497.6E-1268123IPR001005SANT/Myb domain
CDDcd001671.36E-869125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGRIPCCEKD NVKRGQWTPE EDNKLSSYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY  60
LRPDLKHGEF SESEEQTIVK LHSVVGNRQC PLPYLRDGYM TWSLIAAQLP GRTDNDVKNH  120
WNTKLKKKLS GMGIDPVTHK PFSHLMAEIA TTLAPPQVAH LAEAALGCFK DEMLHLLTKK  180
RIDFAGPAAP ATGTGDPRLA YNAADPTPNN DDKEDTVQKI KLGLSRAIMQ EPNNGKAWAM  240
MGPAGEPSDA LAGMCDMYPT VGDGFRYDGT AYGNDGDGSA WSQSLCTGST CTGGAAEQQG  300
GGMQEKDEDD DGEEAEGGKA ARKGDTSMFA SDCVLWDLSD DLMNPIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-26141297108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00564DAPTransfer from AT5G56110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813758.10.0transcription factor MYB80
SwissprotQ7XQN11e-131MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A2H3ZHV60.0A0A2H3ZHV6_PHODC; transcription factor MYB80
STRINGXP_008813758.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108673339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-114myb domain protein 103