PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1065691g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | ARF | ||||||||
Protein Properties | Length: 1129aa MW: 125398 Da PI: 6.8547 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.4 | 2.3e-22 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F PDK_30s1065691g002 128 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI- 215 99*****************************954.4444.49************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++++++l+++++r+ PDK_30s1065691g002 216 -RDEKQQLLLGIRRA 229 .5688889****997 PP | |||||||
2 | Auxin_resp | 116.9 | 1.8e-38 | 254 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFvv+++k++ka++ +++s+GmRf+m fete+s +rr++Gt++g+sdldpvrW+nS+W +L+ PDK_30s1065691g002 254 AAHAAANNSPFTVFYNPRASPSEFVVPFAKYQKAVYnNQISLGMRFRMLFETEESGTRRYMGTITGISDLDPVRWKNSQWCNLQ 337 79********************************98799*****************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.11E-42 | 122 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-40 | 123 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.40E-18 | 127 | 219 | No hit | No description |
Pfam | PF02362 | 1.7E-20 | 128 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.716 | 128 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.7E-22 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-33 | 254 | 337 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.5E-9 | 994 | 1081 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.984 | 996 | 1080 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 7.85E-7 | 1013 | 1075 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1129 aa Download sequence Send to blast |
MKGTVSAAPA ANPCDGERKT INPELWYACA GPLVTLPPVG SLVVYFAQGH SEQVAASMQK 60 DIDAHIPNYP NLPSKLICLL HNVTLHADPE TDEVYAQMTL QPVSTYDKDA LQASELALKQ 120 TRMQTEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDFS MQPPAQELQA RDLHDNVWTF 180 RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVLFIRDEKQ QLLLGIRRAN RQPTNISSSV 240 LSSDSMHIGI LAAAAHAAAN NSPFTVFYNP RASPSEFVVP FAKYQKAVYN NQISLGMRFR 300 MLFETEESGT RRYMGTITGI SDLDPVRWKN SQWCNLQVGW DESAAGERRN RVSIWEIEPV 360 LAPFFICPPP FFRPKRPRQP GIPDDESSDM ENLFKRAMPW LSEEICRKDS QTQNTVMPGL 420 SLVQWMSMQQ NAPPANSNMQ TDYLRSLTAP AIQNAGATDL SRQLGMQAPF LQQNNIQFNA 480 ARLPQQNQQL DQFSKVSVPL NQLGVVTRPQ QQMQDVGTQQ RQQLVNQSLP LNQTQSNIIQ 540 PQVLVQAQVQ QQQPVIQSHQ PLQTSMQQNQ PQHQQLFLQQ QQQHQQQHQQ QHQQQLQQQH 600 QFQQQQNRMP VQLPNHINQQ LQLTDHQIQL QLLQKPQQQQ QTLSQPTAQH PELPQIQEQQ 660 KPHSEGPHQL ANSHSLTQQN MLSQQCAKTT SQAVRLSQPL PQQSQQKFHQ QQVVLSELNG 720 AVLPPTPKTN LLPTTGSSLL AAGGAQSGLT EDVPSCSTSP STNNGVVFPQ LILNRSHHPS 780 TMTTDKTSQS AVTILSHNSF EAAAATPNIA TELPKPINNV KASTPISKVQ TQGVIAPQTF 840 ISNAAQMDYL DTTSSGTSVC ISQTDGPLQQ SFPLSSLNQP SMFGDAPPDS EVQGTDPRNN 900 VLFGVNIDGP LGIPLTTDAL LANSINSGKY QNLISGNVIT NPSTSKDTQQ ELSSSMVSQS 960 FGVPNVAFNS IDSTVNEGSF LNRSSWAPAP PLQRMRTYTK VHKRGAVGRS IDIARYSGYD 1020 ELKHDLARMF SIEGQLEDRQ RIGWKLVYVD HESDVLLVGD DPWEEFVNCV RYIRILSPQE 1080 VQQMSLDGDL GNNILPNQAC SSSDGGNAWR GQCDRNSGNP SAGSYDHLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-168 | 16 | 358 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008798164.1 | 0.0 | auxin response factor 19-like isoform X2 | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | A0A2H3YG65 | 0.0 | A0A2H3YG65_PHODC; Auxin response factor | ||||
STRING | XP_008798163.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1409 | 35 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |