PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1065091g007

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

ERF

Protein Properties

Length: 363aa MW: 39897.8 Da PI: 9.788

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1065091g007	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.7	1.9e-15	194	245	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g PDK_30s1065091g007 194 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDVAAIKFRG 245 57**************988532...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	11.311	80	159	IPR001471	AP2/ERF domain
SMART	SM00380	0.0019	121	165	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.5E-7	130	159	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.07E-8	130	161	IPR016177	DNA-binding domain
SuperFamily	SSF54171	2.42E-18	194	255	IPR016177	DNA-binding domain
CDD	cd00018	3.82E-26	194	255	No hit	No description
Pfam	PF00847	1.4E-10	194	245	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.0E-19	195	254	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.348	195	253	IPR001471	AP2/ERF domain
SMART	SM00380	5.1E-34	195	259	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.2E-5	196	207	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.2E-5	235	255	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MAASEVYGTR WDVRSVTSRL QAPKLEDMLG GQRSSPMDPC SDTLTDGQDS SSLGTNIQKP 60 KNVWDILKAV HLSSSKVLRE KKGKRERFGV SFGTIIQSIY FESLQISFIN GPRVSLSLSG 120 QRRIAVRRDG GYDNEEKAAR AYDLAALKYW GPIATTNFPV KIYSREIEEM KSMSKQEFIA 180 SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTEE EAAEAYDVAA 240 IKFRGASAVT NFELSRYDVE AIANTDLPIG ATARRIKQSL QASNNHLTLS SSSISQQPTP 300 MPSAFLHGIL QLHTSSGPSG PLAHSGLVPS EPDVCSQSLY WLTANDQNSS QVDNQPMGVV 360 FSS

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MAASEVYGTR WDVRSVTSRL QAPKLEDMLG GQRSSPMDPC SDTLTDGQDS SSLGTNIQKP  60
KNVWDILKAV HLSSSKVLRE KKGKRERFGV SFGTIIQSIY FESLQISFIN GPRVSLSLSG  120
QRRIAVRRDG GYDNEEKAAR AYDLAALKYW GPIATTNFPV KIYSREIEEM KSMSKQEFIA  180
SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTEE EAAEAYDVAA  240
IKFRGASAVT NFELSRYDVE AIANTDLPIG ATARRIKQSL QASNNHLTLS SSSISQQPTP  300
MPSAFLHGIL QLHTSSGPSG PLAHSGLVPS EPDVCSQSLY WLTANDQNSS QVDNQPMGVV  360
FSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269\|PubMed:15988559}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008793348.3	1e-168	AP2-like ethylene-responsive transcription factor AIL5
Swissprot	Q6PQQ3	3e-81	AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBL	A0A2H3Y4V6	1e-167	A0A2H3Y4V6_PHODC; AP2-like ethylene-responsive transcription factor AIL5
STRING	XP_008793348.1	1e-171	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13579	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	2e-78	AINTEGUMENTA-like 5

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Molitor AM,Bu Z,Yu Y,Shen WH Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes. PLoS Genet., 2014. 10(1): p. e1004091 [PMID:24465219] Feng J,Chen D,Berr A,Shen WH ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development. Plant Physiol., 2016. 172(3): p. 1746-1759 [PMID:27630184] Santuari L, et al. The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots. Plant Cell, 2016. 28(12): p. 2937-2951 [PMID:27920338] Du Y,Scheres B PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398]