PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1051821g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 307aa MW: 34164.1 Da PI: 10.155

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1051821g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.8	1.5e-07	17	69	2	48
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......t 48 +Y++Y++++GF+ ++ + k+s+ n+ ++++f Csk ++ + + + PDK_30s1051821g002 17 YYSTYGEKMGFKAQTGSGKRSRGNRILIMQRFLCSKGSYPPYGNAAdgaarkR 69 8***********************************99988777664433220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-4	17	70	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MPRLDMEFDS ISAAKAYYST YGEKMGFKAQ TGSGKRSRGN RILIMQRFLC SKGSYPPYGN 60 AADGAARKRK RGPYKKRAQK NAEEAQKDGE VVEVIQVESS TEKAGAVGDE HGGEVQSGQL 120 KKGAVFVEKD MTPKEPATEI NSRKDSAVAG KGQDGGKVPL VSNPAQSRLL RELGIRVSRY 180 THEERRDIIL KYMQKRSNRQ VVDRSIKIPS RQALAERRQR GAGGKFLSKE EMQQFSVLFA 240 FTHDLMIMHD IMISAIDEEM VMEGHVYFVP AHSEIELIAG AAGRLQLYRA GVNSRALEVI 300 IIKDLLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	71	ARKRKRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010941615.1	1e-147	protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A3Q0IH99	1e-128	A0A3Q0IH99_PHODC; protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	XP_008811123.1	1e-128	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14833	13	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	1e-07	FAR1-related sequence 7