PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1051101g011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 159aa MW: 18386.1 Da PI: 9.7471 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.3 | 6e-53 | 9 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp+GfrFhPtdeelv++yLk k++g+ +++ vi+evd++k+ePwdLp k +++++ ew+fFs+rd+ky++g+r+nratk+gyWkatg+d PDK_30s1051101g011 9 LPRGFRFHPTDEELVNHYLKGKINGRINSEVVVIPEVDVCKCEPWDLPdKsVIRSDDPEWFFFSPRDRKYPSGHRSNRATKAGYWKATGRD 99 799***********************9888788**************96446677888********************************* PP NAM 90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++k +++ +g+kktLvf++grapkg++t+W++heyr PDK_30s1051101g011 100 RMIKTKppGSTIIGMKKTLVFHRGRAPKGVRTNWIIHEYRT 140 *****9999999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-57 | 4 | 143 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.345 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-28 | 10 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0071470 | Biological Process | cellular response to osmotic stress | ||||
GO:1900426 | Biological Process | positive regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MAVLPLESLP RGFRFHPTDE ELVNHYLKGK INGRINSEVV VIPEVDVCKC EPWDLPDKSV 60 IRSDDPEWFF FSPRDRKYPS GHRSNRATKA GYWKATGRDR MIKTKPPGST IIGMKKTLVF 120 HRGRAPKGVR TNWIIHEYRT TEFEFDSGEQ VSSCFLLFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-44 | 8 | 142 | 19 | 147 | NAC domain-containing protein 19 |
3swm_B | 3e-44 | 8 | 142 | 19 | 147 | NAC domain-containing protein 19 |
3swm_C | 3e-44 | 8 | 142 | 19 | 147 | NAC domain-containing protein 19 |
3swm_D | 3e-44 | 8 | 142 | 19 | 147 | NAC domain-containing protein 19 |
3swp_A | 3e-44 | 8 | 142 | 19 | 147 | NAC domain-containing protein 19 |
3swp_B | 3e-44 | 8 | 142 | 19 | 147 | NAC domain-containing protein 19 |
3swp_C | 3e-44 | 8 | 142 | 19 | 147 | NAC domain-containing protein 19 |
3swp_D | 3e-44 | 8 | 142 | 19 | 147 | NAC domain-containing protein 19 |
3ulx_A | 2e-44 | 8 | 139 | 14 | 139 | Stress-induced transcription factor NAC1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00108 | PBM | Transfer from AT4G35580 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008808290.1 | 1e-107 | protein NTM1-like 9 | ||||
Swissprot | F4JN35 | 9e-71 | NTL9_ARATH; Protein NTM1-like 9 | ||||
TrEMBL | A0A2H3Z537 | 1e-106 | A0A2H3Z537_PHODC; protein NTM1-like 9 | ||||
STRING | XP_008808290.1 | 1e-106 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5172 | 38 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 4e-73 | NAC transcription factor-like 9 |
Publications ? help Back to Top | |||
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