PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1050381g029
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 315aa    MW: 34392.7 Da    PI: 8.4902
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1050381g029genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-0888112126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+lC+ f +   C+ G++C+FaHg
  PDK_30s1050381g029  88 FKTRLCQKFKA-RSCPWGGNCNFAHG 112
                         79*********.*************8 PP
2zf-CCCH24.16.5e-08144166426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         ++Cr f+ +  C+yGdrC++ H+
  PDK_30s1050381g029 144 KICRKFYNGEVCPYGDRCTYLHV 166
                         58******66************7 PP
3zf-CCCH22.81.6e-07212237126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +k+++C  +  tG+C++G+rC + H+
  PDK_30s1050381g029 212 PKMKICYKWETTGHCSFGERCIYTHS 237
                         6999*****************77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.97E-885118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-1487120IPR000571Zinc finger, CCCH-type
SMARTSM003560.1687113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61987114IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-688112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-7140169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479140168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-9141169IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4142167IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5145166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-10209242IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-5211238IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.033211239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-8211242IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-5212237IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGTPPDQASA SFIPHPPPLF AAAISDHVIT LWPQNPADQA EFEAPPFKRP RNSDGIPLNP  60
LAVISSPPNA QTNPPPNPPT RGTNCVFFKT RLCQKFKARS CPWGGNCNFA HGIEELRQPP  120
PNWQELVAVE RVNGSDRQRM HRNKICRKFY NGEVCPYGDR CTYLHVERES SGMVVGSVAG  180
LEQGGNGSGL HNSDSTGGFS SVGDCNGSNQ KPKMKICYKW ETTGHCSFGE RCIYTHSRAE  240
LKKSGGHVEL DGGKIGAAPS KPASNSTNDA PLIKTESTCM HQAQQKKSVF PNLSKKLSCI  300
YADWIDDIPL FSRTS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008785025.10.0zinc finger CCCH domain-containing protein 39-like
RefseqXP_008785034.10.0zinc finger CCCH domain-containing protein 39-like
RefseqXP_008785044.10.0zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A2H3XK800.0A0A2H3XK80_PHODC; zinc finger CCCH domain-containing protein 39-like
STRINGXP_008785025.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2293446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-43C3H family protein