PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1041821g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 350aa    MW: 38102.1 Da    PI: 6.5932
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1041821g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.8e-0895120127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+lC+ f++ GtC+y  +C+FaHg+
  PDK_30s1041821g001  95 FKTKLCCKFRA-GTCPYITNCNFAHGM 120
                         69*********.*************95 PP
2zf-CCCH43.45.5e-14226251126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt++C+ +  tG+C++G++C+FaHg
  PDK_30s1041821g001 226 WKTRICNKWEMTGYCPFGSKCHFAHG 251
                         8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.63E-892125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-1492127IPR000571Zinc finger, CCCH-type
SMARTSM003560.001694120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.73794121IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-595120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-7163192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.685164192IPR000571Zinc finger, CCCH-type
SMARTSM003560.11164191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-8164192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-17221255IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-10222256IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9225252IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422225253IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-11226251IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDYSSNAIEI IPEATGPELW AQASDDQAVW ATEDDYRSWK GEPSADTASN PAYGDRQSQT  60
QSRAGGEQPP SKKPRDSLEG NGSMSKSRAI GKMFFKTKLC CKFRAGTCPY ITNCNFAHGM  120
EELRKPPPNW QEIVAAQEEG AEPREEHQIP ILTSSSLGGD GQRSYKGRHC KKFYTEEGCP  180
YGDMCTFLHD EQSKARESVA ISLSPTVGGG GYGGGSNGST QKPSNWKTRI CNKWEMTGYC  240
PFGSKCHFAH GAAELHRYGG GLVEMEGRDA SSAAPDSKQA GVSTKAPADN AVASVTSVPH  300
VDVYHMGVPS QRSTIVNQRQ GLSQGQRTLQ KWKGPDKISS IYGDWIEENE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788666.10.0zinc finger CCCH domain-containing protein 56-like isoform X2
SwissprotQ84UQ31e-153C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A2H3XTX90.0A0A2H3XTX9_PHODC; zinc finger CCCH domain-containing protein 56-like isoform X2
STRINGXP_008788660.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-118C3H family protein