PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1035821g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 229aa MW: 25826.3 Da PI: 9.6883 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.4 | 5.9e-19 | 86 | 140 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++++++ +e++ LAk+l+L rqV vWFqNrRa+ k PDK_30s1035821g001 86 RKKLRLTKEQSALLEDKFKEQSTLNPKEKQALAKQLNLRPRQVEVWFQNRRARTK 140 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 119.1 | 2.4e-38 | 86 | 175 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLE++F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr +++l++en+rL+ke +eLr +l PDK_30s1035821g001 86 RKKLRLTKEQSALLEDKFKEQSTLNPKEKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEKLKRYCETLSDENRRLQKELNELR-AL 175 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.94E-18 | 80 | 143 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.556 | 82 | 142 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.7E-16 | 84 | 146 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 86 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.19E-16 | 86 | 143 | No hit | No description |
Pfam | PF00046 | 2.9E-16 | 86 | 140 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 117 | 140 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.4E-8 | 142 | 176 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.4E-20 | 142 | 185 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MISLEPSLTL GLSDDTYGST VAKVDGSKTW MEGSRVARQS SPQSTVSTFY NSHHPSKTKR 60 DNSMKSDETD KVLSRGSDEE EEGNARKKLR LTKEQSALLE DKFKEQSTLN PKEKQALAKQ 120 LNLRPRQVEV WFQNRRARTK LKQTEVDCEK LKRYCETLSD ENRRLQKELN ELRALKLASP 180 LCMQFPAAAL TMCPSCKRIN TASEGSKGGR FVVAPEAHLF NPFTHSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 142 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008796968.1 | 1e-170 | homeobox-leucine zipper protein HAT22-like | ||||
Refseq | XP_026662450.1 | 1e-170 | homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | A2XE76 | 3e-69 | HOX19_ORYSI; Homeobox-leucine zipper protein HOX19 | ||||
Swissprot | Q8GRL4 | 3e-69 | HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19 | ||||
TrEMBL | A0A2H3YCZ8 | 1e-168 | A0A2H3YCZ8_PHODC; homeobox-leucine zipper protein HAT22-like | ||||
STRING | XP_008796968.1 | 1e-169 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2055 | 36 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 2e-71 | HD-ZIP family protein |