PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1027421g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 332aa MW: 36864.2 Da PI: 7.9229 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.7 | 1.1e-16 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ie++++r+ t+ kR g+ KKA+EL +LCd+ ++ i f+++g++ +++ PDK_30s1027421g001 9 KFIEEQRKRSATYRKRIGGLKKKASELAILCDIPALAISFGPEGQVETWP 58 79***********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.2E-14 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.404 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.21E-18 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 4.32E-20 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-10 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-14 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-10 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-10 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MGRPKVQLKF IEEQRKRSAT YRKRIGGLKK KASELAILCD IPALAISFGP EGQVETWPED 60 NQAAGYIIQR YRELSTVIQN KHKLDLPGYM KAEINKRRAS CNRRIRDLAD TPLLPTDDLL 120 CAMNKSLREL AHQLDSRMEA IKERIQLLKD RQHFNGGETI NLGGQCLEIV PRDGMMGIQS 180 TSSGYDLMVS DPYLTLNTSL QYPPQPRSFS FLQFPYVPVS MDEVPLATVP SIPMNMDEVP 240 FTVVPPIPTS STSPLVGAIL ENDSANRGVV PVHPLNSSIG LFENHNLMGG GAAEQNHTNI 300 VVAQNNVHHL ADCASPKQTS VSSKPWPFAW NP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008783100.1 | 0.0 | agamous-like MADS-box protein AGL14 | ||||
TrEMBL | A0A2H3XFV9 | 0.0 | A0A2H3XFV9_PHODC; agamous-like MADS-box protein AGL14 | ||||
STRING | XP_008783100.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16694 | 4 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.3 | 6e-13 | M-type_MADS family protein |