PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1025361g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 575aa    MW: 63083.1 Da    PI: 8.2245
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1025361g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.17.9e-33228285260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkver+  d++++ei+Y+g+Hnh+k
  PDK_30s1025361g003 228 DDGYNWRKYGQKQVKGSENPRSYYKCTYPTCPTKKKVERNM-DGQITEIVYKGTHNHPK 285
                         8****************************************.***************85 PP
2WRKY105.92.2e-33395453159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d ++v++tYeg+Hnh+
  PDK_30s1025361g003 395 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTMGCPVRKHVERASQDLRAVITTYEGKHNHD 453
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-28217286IPR003657WRKY domain
SuperFamilySSF1182903.66E-25221286IPR003657WRKY domain
SMARTSM007741.7E-34227285IPR003657WRKY domain
PROSITE profilePS5081123.709228286IPR003657WRKY domain
PfamPF031063.5E-25228284IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-37380455IPR003657WRKY domain
SuperFamilySSF1182904.05E-29387455IPR003657WRKY domain
PROSITE profilePS5081138.285390455IPR003657WRKY domain
SMARTSM007741.2E-38395454IPR003657WRKY domain
PfamPF031069.4E-26396453IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MASSTGSLDA SSNSHPASFS FSSPRGLSDR AGSGGGGIPK FKSIPPPSLP ISPPPFSPSS  60
YFAIPAGLSP AELLDSPVLL SSSNILPSPT TGTFPSLAFN WRTKSANPQP GIKEENRACS  120
DFSFQPHTKP MNSQFASFQP SSAAVTTEEA FKGHHQPWSH HETSNNNSEL SSQKSNIKGE  180
HMVPIRTSSS EIPNLQANSQ GNNNGGCQSD YKHCSQAAQT LREHRRSDDG YNWRKYGQKQ  240
VKGSENPRSY YKCTYPTCPT KKKVERNMDG QITEIVYKGT HNHPKPQPTR RNSASSQAIQ  300
GSVPSEAYDH SFGGQAGTPI DSVATPDNSS VSFGDDDNNM SSQRSNSRGD DFDEDEPDAK  360
RWKKEGENEG ISASGNKTVR EPRVVVQTTS DIDILDDGYR WRKYGQKVVK GNPNPRSYYK  420
CTTMGCPVRK HVERASQDLR AVITTYEGKH NHDVPAARGS GGHAGSRPLI DNNNNFSMAI  480
RPSAIASHAN HVAASSLFGG RLHASESQSP FTLEMLQSTG NYGYSGYENS INSFVNQQQQ  540
QQQQQQQQQQ RHMEIMFPKT KEEPREDMFL ESLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-37215456578Probable WRKY transcription factor 4
2lex_A7e-37215456578Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9571841e-68FJ957184.1 Elaeis oleifera voucher FTG:Noblick 5521 WRKY transcription factor 7 (WRKY7) gene, exons 1 through 3 and partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008804160.10.0WRKY transcription factor WRKY24-like
SwissprotQ6B6R41e-150WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2H3YUQ30.0A0A2H3YUQ3_PHODC; WRKY transcription factor WRKY24-like
STRINGXP_008804160.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.15e-96WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]