PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1023201g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 348aa    MW: 37999.9 Da    PI: 7.1972
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1023201g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.8e-0895120127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+lC+ f++ GtC+y  +C+FaHg+
  PDK_30s1023201g002  95 FKTKLCCKFRA-GTCPYITNCNFAHGM 120
                         69*********.*************95 PP
2zf-CCCH18.34.3e-06164189126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         yk + C+ f+    C+yGd+C+F H+
  PDK_30s1023201g002 164 YKGRHCKKFYTEEGCPYGDTCTFLHD 189
                         78888********************7 PP
3zf-CCCH43.45.5e-14225250126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt++C+ +  tG+C++G++C+FaHg
  PDK_30s1023201g002 225 WKTRICNKWEMTGYCPFGSKCHFAHG 250
                         8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.63E-892125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-1492127IPR000571Zinc finger, CCCH-type
SMARTSM003560.001694120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.73794121IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-595120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-7162191IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.742163191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-8163191IPR000571Zinc finger, CCCH-type
SMARTSM003560.15163190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-17220254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-10221255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422224252IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9224251IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-11225250IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDYSSNAIEI IPEATGPEPW AQASNDQAIW ATEDDYRSWN GEPSADTVSN PAYGDRQSQS  60
QSRAGSEQPP SKKPRNSLEG NGSTSKSRAI GKMFFKTKLC CKFRAGTCPY ITNCNFAHGM  120
EELRKPPPNW QEIVASQEGM EPREEHQIPI LTSSNLGADG QRSYKGRHCK KFYTEEGCPY  180
GDTCTFLHDE QSKARESVAI SLSPTVGGGG YGGGQNASNQ KPSNWKTRIC NKWEMTGYCP  240
FGSKCHFAHG AAELHRYGGG LVEMEGRDAS SVATDSKQVG ASTRAPADTV VASMQSVPHA  300
DVYHMGGPSQ RSSVVGQRQG LGQGQRLQKW KGPDKISRIY GDWIDESE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008799391.10.0zinc finger CCCH domain-containing protein 56-like
SwissprotQ84UQ31e-148C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A2H3YIP10.0A0A2H3YIP1_PHODC; zinc finger CCCH domain-containing protein 56-like
STRINGXP_008799391.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-113C3H family protein