PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1022981g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 453aa    MW: 50929.3 Da    PI: 6.6469
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1022981g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.7e-20199249155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta eAa a+++a+k+++g
  PDK_30s1022981g004 199 CKYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTALEAALAYDEAAKAMYG 249
                         79*****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.18E-29199257No hitNo description
PfamPF008471.5E-14199249IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-20200257IPR016177DNA-binding domain
PROSITE profilePS5103221.575200257IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-30200258IPR001471AP2/ERF domain
SMARTSM003802.9E-34200263IPR001471AP2/ERF domain
PRINTSPR003671.9E-9201212IPR001471AP2/ERF domain
PRINTSPR003671.9E-9223239IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MAEPERTFVM RFDMGTCLYF DSKIDFSFPK HSKSCAIEVV INEIILLHMI LGMSADLERL  60
IVQRHADEKS RTNFKNKVVC VKVKESFQDR RRSWNRCAQT IKKNLAFCNQ NQVVVIVSLN  120
QGTSFPTNAE VLVLYARKKR VRRSHNGPNS VAETIARWRE QNSQLECSFN GEKRARRAPA  180
KGSKKGCMKG KGGPDNAHCK YRGVRQRTWG KWVAEIREPN RGSRLWLGTF PTALEAALAY  240
DEAAKAMYGP YARLNLPQFN GAANAQATTS GSCESTTTSH HSDVSHDWSP RSPEVKVPKK  300
ELEEEIRNDS LPPAPVGAAA KVEQPGEELF GPRDQLEDLP EDMFDIGDML RMMDADPTNR  360
GVGGEHTDGR TGHSGDVDAD INWQLSSPSA LSFQLQNPDA KLLGSLHHME QNPIAMDYGY  420
DDFVSQLEQD WKYGLPDDDP GMWEMGYPES DLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-16189258373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008804144.10.0dehydration-responsive element-binding protein 2B-like isoform X2
TrEMBLA0A2H3YVJ10.0A0A2H3YVJ1_PHODC; dehydration-responsive element-binding protein 2B-like isoform X2
STRINGXP_008804144.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11020.12e-31DRE/CRT-binding protein 2B