PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1022651g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 818aa MW: 93901.3 Da PI: 8.5062

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1022651g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.8	1.5e-22	36	120	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ Y+kevGF vrk+ k+ + +g +++r f C+keg++++ k+ +r+r+ rtgC+a+++v+ ++dg+++v+++e +HnHela PDK_30s1022651g003 36 RFYCLYGKEVGFGVRKHLVKR-RSSGLVYSRVFSCYKEGFSRTAKQG----KRPRPDARTGCQAHMTVRIMNDGRFRVSEFEPKHNHELA 120 5***********9987666.58999**********998766....9**********************************96 PP
2	FAR1	73.5	4.4e-23	222	308	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA+ +GFsvrk+ k+ + +g i++r +vC keg+r++++++ + r +++ +rtgC a++++k +k+g+++vt++e +HnH+l+ PDK_30s1022651g003 222 QFYINYATGIGFSVRKHLVKR-RASGVIYSRMYVCHKEGFRRKHNEQ--HGRCPKPYERTGCLASMTIKITKNGRYCVTEFEPKHNHALV 308 6***********9987666.59999***********99877..9***********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-20	36	120	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.5E-20	222	308	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-11	433	518	IPR018289	MULE transposase domain
Pfam	PF04434	3.4E-5	679	722	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.732	690	726	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0013	701	728	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence Send to blast
MSELVEQPVS SVGNSSDESW VPKIDMVFES DEKAYRFYCL YGKEVGFGVR KHLVKRRSSG 60 LVYSRVFSCY KEGFSRTAKQ GKRPRPDART GCQAHMTVRI MNDGRFRVSE FEPKHNHELA 120 VNVLTAMPDV AVDSGTVPND AHKNVGKQVI VRPSLRNYIP SKSLNATKLG GMGAVMRYVQ 180 QGIPESRADS PSFCHPMGGA AVNESWVPKI GMEFEDDEAA YQFYINYATG IGFSVRKHLV 240 KRRASGVIYS RMYVCHKEGF RRKHNEQHGR CPKPYERTGC LASMTIKITK NGRYCVTEFE 300 PKHNHALVIP SKAHLFRWRW RRGLIATQVD LIDLAEELKA APEPSKEQMD EQDKSCQIPA 360 FLSSGYKNYI PSKRMNAMKL GDAGAVMQYV HEKQVADPSF YYALQLDLDD RVTNIFWADA 420 KSMVDFEHFG DALCFDTTYK TSNYGRPFSH FIAFLYDETE ESFKWLFETF KTAMSGKQPK 480 WLFETFKTAM SGKQPKVILT DRSVAMSNAI AAAWPGSVTF TRDFSKCLYD YEDEEEFLLG 540 WKTMLENYDL HSNAWLAQLY EDREKWALAY GRQIFCADMK TALIKESMNN MLKELLDAER 600 DLSDFFRHYD EMVFERRQAE LQADIHAHQN IQMMLSSRML RQAANAYTPE VFKIFQREFE 660 LSMDCLVYGC GQVGTTFEFK VTVEDNPKRY TVRYDSSNGM VMCSCKKFEF VGIQCRHVLK 720 TLDIINIKEL PPGYILKRWR KDAKVVNRRA NHEVAVDGGT KSTRAKRYSS LCCIFNKIAV 780 RAAETVESYT FIESLSDQLM DQVYKILQTK PPQGLEAG

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence Send to blast

MSELVEQPVS SVGNSSDESW VPKIDMVFES DEKAYRFYCL YGKEVGFGVR KHLVKRRSSG  60
LVYSRVFSCY KEGFSRTAKQ GKRPRPDART GCQAHMTVRI MNDGRFRVSE FEPKHNHELA  120
VNVLTAMPDV AVDSGTVPND AHKNVGKQVI VRPSLRNYIP SKSLNATKLG GMGAVMRYVQ  180
QGIPESRADS PSFCHPMGGA AVNESWVPKI GMEFEDDEAA YQFYINYATG IGFSVRKHLV  240
KRRASGVIYS RMYVCHKEGF RRKHNEQHGR CPKPYERTGC LASMTIKITK NGRYCVTEFE  300
PKHNHALVIP SKAHLFRWRW RRGLIATQVD LIDLAEELKA APEPSKEQMD EQDKSCQIPA  360
FLSSGYKNYI PSKRMNAMKL GDAGAVMQYV HEKQVADPSF YYALQLDLDD RVTNIFWADA  420
KSMVDFEHFG DALCFDTTYK TSNYGRPFSH FIAFLYDETE ESFKWLFETF KTAMSGKQPK  480
WLFETFKTAM SGKQPKVILT DRSVAMSNAI AAAWPGSVTF TRDFSKCLYD YEDEEEFLLG  540
WKTMLENYDL HSNAWLAQLY EDREKWALAY GRQIFCADMK TALIKESMNN MLKELLDAER  600
DLSDFFRHYD EMVFERRQAE LQADIHAHQN IQMMLSSRML RQAANAYTPE VFKIFQREFE  660
LSMDCLVYGC GQVGTTFEFK VTVEDNPKRY TVRYDSSNGM VMCSCKKFEF VGIQCRHVLK  720
TLDIINIKEL PPGYILKRWR KDAKVVNRRA NHEVAVDGGT KSTRAKRYSS LCCIFNKIAV  780
RAAETVESYT FIESLSDQLM DQVYKILQTK PPQGLEAG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	85	KRPRP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010930750.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X2
Refseq	XP_029122469.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	A0A2H3ZKF1	0.0	A0A2H3ZKF1_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008781579.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	1e-85	FAR1-related sequence 7