PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1016151g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 295aa    MW: 33427.6 Da    PI: 5.811
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1016151g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.51.8e-51211482128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                          pGfrFhPtdeelv +yL++kve+k+l++ ++ike+diyk++PwdLp++++++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d+++
  PDK_30s1016151g001  21 LPGFRFHPTDEELVGFYLRRKVEKKPLSI-DMIKEIDIYKYDPWDLPTSTAGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPI 110
                         69***************************.99***************8888999************************************* PP

                 NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +s+   ge +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  PDK_30s1016151g001 111 YSAgdAGECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 148
                         **9777788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-5619175IPR003441NAC domain
PROSITE profilePS5100555.0320175IPR003441NAC domain
PfamPF023653.7E-2522148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDSKSAGGEQ EVVREEEDVV LPGFRFHPTD EELVGFYLRR KVEKKPLSID MIKEIDIYKY  60
DPWDLPTSTA GGEKEWYFFC LRGRKYRNSI RPNRVTGSGF WKATGIDRPI YSAGDAGECI  120
GLKKSLVYYR GSAGKGTKTD WMMHEFRLPA SGKNDDISPS AQEAEIWTIC RIFKRNISCR  180
KYPQDMKAST SKQMPTDSGS KTSSFESDTG DEYKCFGSSS IPQGEMKLIP SYYEEKNQLL  240
AGQWNSAAQA PLATLHPNIP NMSTIEFFKD SNWDELGRIM EFMPDPSAAH ECGYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-5051812171NO APICAL MERISTEM PROTEIN
1ut4_B2e-5051812171NO APICAL MERISTEM PROTEIN
1ut7_A2e-5051812171NO APICAL MERISTEM PROTEIN
1ut7_B2e-5051812171NO APICAL MERISTEM PROTEIN
4dul_A2e-5051812171NAC domain-containing protein 19
4dul_B2e-5051812171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806688.10.0transcription factor JUNGBRUNNEN 1-like isoform X1
SwissprotQ9SK553e-90NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2H3Z0S90.0A0A2H3Z0S9_PHODC; transcription factor JUNGBRUNNEN 1-like isoform X1
STRINGXP_008806688.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-91NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]