PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1012181g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HSF

Protein Properties

Length: 433aa MW: 48939 Da PI: 5.0236

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1012181g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	39.4	1.6e-12	16	61	2	47
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkh 47 Fl+k+y++++d+++++++sws ++sf+v+++ efa+++Lpk F++ PDK_30s1012181g002 16 FLTKTYDMVDDPSTNSIVSWSPGNTSFIVWNPPEFARDLLPKGFRK 61 9******************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.2E-14	9	60	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	3.17E-20	11	88	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.3E-37	12	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.0E-9	16	60	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	6.8E-5	61	88	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MEGSQGGSGS NSPAPFLTKT YDMVDDPSTN SIVSWSPGNT SFIVWNPPEF ARDLLPKGFR 60 KIDPDQWEFA NEDFARGQRH LLRNIHRRKP IHSHSLHHQG SSGPLAETER HELEEEIERL 120 KHDKLMLISE LQKHTQLQHG MEQKMQTLEE RLHDMEHRQR NLLAFLTQIV QRHGFLSDFV 180 QQSEFLSKKR RLPKTSYFYE DANMEENCVI SQSKSREESN MGSMHAVDIE PFEKMESSLN 240 SLENFFRGVS QASGEDVYYD CALHSLPSGA VLTEMNASSE DTEVNLRSPS PKLHPSSPCL 300 GDMHSSPELT ESTSYAESPA LPLTEIQTDT RIKVSEIDVN SEPAAPEVDS SRERAAGAAA 360 STVPTGVNDV FWEQFLTETP GSSDTQEVQS ERRNTDDRRS EGKMGERGNI WWSRKNVDHL 420 AEKMGHLTSA ETT

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MEGSQGGSGS NSPAPFLTKT YDMVDDPSTN SIVSWSPGNT SFIVWNPPEF ARDLLPKGFR  60
KIDPDQWEFA NEDFARGQRH LLRNIHRRKP IHSHSLHHQG SSGPLAETER HELEEEIERL  120
KHDKLMLISE LQKHTQLQHG MEQKMQTLEE RLHDMEHRQR NLLAFLTQIV QRHGFLSDFV  180
QQSEFLSKKR RLPKTSYFYE DANMEENCVI SQSKSREESN MGSMHAVDIE PFEKMESSLN  240
SLENFFRGVS QASGEDVYYD CALHSLPSGA VLTEMNASSE DTEVNLRSPS PKLHPSSPCL  300
GDMHSSPELT ESTSYAESPA LPLTEIQTDT RIKVSEIDVN SEPAAPEVDS SRERAAGAAA  360
STVPTGVNDV FWEQFLTETP GSSDTQEVQS ERRNTDDRRS EGKMGERGNI WWSRKNVDHL  420
AEKMGHLTSA ETT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008792312.1	0.0	heat stress transcription factor A-4b-like
Swissprot	Q94J16	1e-139	HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBL	A0A2H3Y266	0.0	A0A2H3Y266_PHODC; heat stress transcription factor A-4b-like
STRING	XP_008792312.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3296	37	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18880.1	1e-66	heat shock transcription factor A4A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Shim D, et al. Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice. Plant Cell, 2009. 21(12): p. 4031-43 [PMID:20028842] Guan JC, et al. A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses. J. Exp. Bot., 2010. 61(15): p. 4249-61 [PMID:20643810]