PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr042397.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 355aa    MW: 38329.1 Da    PI: 6.3102
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr042397.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.12.1e-17257290134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Pbr042397.1 257 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 290
                  99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.4E-754341IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.424251287IPR000679Zinc finger, GATA-type
SMARTSM004019.3E-17251301IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-15255314No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14255288IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.83E-14256303No hitNo description
PROSITE patternPS003440257282IPR000679Zinc finger, GATA-type
PfamPF003204.5E-15257290IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEKMIGPNYI DDIDCGSLFD TIDDLLDFPT DDVESVLGPV PDCNAAINSS SLWPSHSGSL  60
QPPNDAVFSC NSASDLSAEL DVPIEDIVQL EWLSNFCEDS FSGGSLTINK PDSSFINKES  120
SHQQFQTSSP ISVLDSSSSC SVEKNVPQSP GTVVPGKRGR ARSKRPRPAT FNPRSAIQLI  180
SPASSVTEAE ALQHQPLLPP KVHSDSENFA ESRPVIKIPK QASGEQKKKK KIKLTLPQAP  240
AEGNQSSGTT QGAVRKCLHC EITKTPQWRA GPMGPKTLCN ACGVRYKSGR LFPEYRPAAS  300
PTFVPALHSN SHKKVIEMRN KGGELIPFGE TTTAMTETPE LIPNTNHSIS LDYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163167KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr042397.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344766.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLA0A498KTT60.0A0A498KTT6_MALDO; GATA transcription factor
STRINGXP_009344766.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-56GATA family protein