PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr041944.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 353aa MW: 38611.1 Da PI: 6.3125 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.6 | 2.5e-09 | 282 | 322 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR +iN ++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Pbr041944.1 282 RKRRGKINARLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 322 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.06E-13 | 271 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.418 | 272 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-11 | 276 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.8E-10 | 278 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.33E-10 | 281 | 326 | No hit | No description |
Pfam | PF00010 | 1.1E-6 | 282 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 353 aa Download sequence Send to blast |
MYLAYKESAA AIANGGWSSL GAMYSSDEEA EFMSQLLANC CVTNEMNEAS SSAIPCAICP 60 SYDFSKSNIE GIYQGSQYSS EIANLYFSNG SVYIMSNNET NHYNGNPNRI METSYHNSEA 120 FRMSDSNATN LILIHGKEYG MDHHQELSNV NIENQPGAAI YEKLLQLNRE SDHEMTIWEP 180 AMENEVMASK GSKKRPCSSV DVQKKTTVKA KKGQKAVLRG NVEDNDKTTK GQSSSSSCLG 240 DYDSIHASHQ DLSGGVSTSS LSPKGKKASR GSATDSQSLY ARKRRGKINA RLRILQNLVP 300 NGTKVDISTM LEEAVQYVKF LQLQIKLLSS DDMCMFAPVA YNGINIGIDL NS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr041944.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009347120.1 | 0.0 | PREDICTED: transcription factor bHLH84-like | ||||
TrEMBL | A0A498JNG0 | 0.0 | A0A498JNG0_MALDO; Uncharacterized protein | ||||
STRING | XP_009347120.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF807 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G14760.1 | 3e-45 | bHLH family protein |