PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr041562.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 264aa MW: 30397.1 Da PI: 9.1939 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 114.6 | 1e-35 | 16 | 152 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 +p+G+rF+Ptdeelv +yL +kv++ +l++ ++i+e+d+++++Pw Lp v +++ yfF +++ +++ g +++ra+ gyWk gk+k+++++ + Pbr041562.1 16 MPVGYRFRPTDEELVIHYLMRKVHAAPLPA-SIIPEFDVFETHPWGLPGDV---REKRYFFYNENMNKNVGINSRRAAGCGYWKPIGKKKQIVNNseS 109 699***************************.89***************554...3467888888888889***********************98767 PP NAM 97 gelvglkktLvfy...........kgrapkgektdWvmheyrl 128 +e+vg++ktLvf + ++ ++++t+W+mheyrl Pbr041562.1 110 NEAVGIRKTLVFCerkrrrchhhhHRSTDTSTQTRWLMHEYRL 152 778**********7766666555435666778*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-43 | 10 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.318 | 16 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-23 | 17 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MENIRENYVI NGGVKMPVGY RFRPTDEELV IHYLMRKVHA APLPASIIPE FDVFETHPWG 60 LPGDVREKRY FFYNENMNKN VGINSRRAAG CGYWKPIGKK KQIVNNSESN EAVGIRKTLV 120 FCERKRRRCH HHHHRSTDTS TQTRWLMHEY RLLASQANPT QVLEKESGNW VVCRIFQKKR 180 RPTQRTSDDM GVVSQRSSNC NKTRRLMGDY ISADDHSRRS DPDLTTLSSP SCSSDITREF 240 SSNDNGELDD DQEGHSVSMP INI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-26 | 14 | 179 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-26 | 14 | 179 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-26 | 14 | 179 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-26 | 14 | 179 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-26 | 14 | 179 | 15 | 166 | NAC domain-containing protein 19 |
4dul_B | 4e-26 | 14 | 179 | 15 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 127 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr041562.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009346804.1 | 0.0 | PREDICTED: NAC domain-containing protein 83-like | ||||
TrEMBL | D9ZJA6 | 1e-178 | D9ZJA6_MALDO; NAC domain class transcription factor | ||||
STRING | XP_009346804.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 8e-47 | NAC domain containing protein 83 |