PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr041336.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 661aa MW: 73862.2 Da PI: 5.3383 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.6 | 4.5e-13 | 461 | 508 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h ErrRR+++N++f L++++P+ K +K++iL ++e++k+L+ Pbr041336.1 461 TNHALSERRRREKLNERFCILKSMVPSV-----SKEDKVSILDDTIEHLKDLE 508 68999**********************6.....49***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.9E-52 | 7 | 217 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 15.878 | 458 | 507 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.77E-14 | 461 | 512 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-16 | 461 | 519 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-10 | 461 | 508 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.26E-16 | 461 | 522 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-12 | 464 | 513 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 661 aa Download sequence Send to blast |
MAVPENLRKQ LALSVRSIQW SYGIFWSISA RQPGVLEWGD GYYNGDIKTR KTVQAVELDA 60 DQMGLQRSEQ LRELYDSLSV GEASPQARRP SASLSPEDLA DTEWYYLVCM SFVFNIGQGL 120 PGRTLANGKP TWLCNAHYVD SKVFSRSLLA KFAQSEELKH LFSVWFSFDG WICTCHPQSA 180 SIQTVVCFPF LGGVIELGVT ELVLEDPSLI QHVKTSFLEA PYPIIASKRT NPSAGSTRND 240 NDLACAMLDD DIVDTKLIPV VGCQEMDVTS PDDSSNGLGP NQPADDSFMV EGMNGGASQV 300 QSWQFMDDEL SNFVHHSMDS SDCISQTLVY PEKVLSGPKT EKANDHCPQD HQEYNSTKKT 360 SLDPQGNDLQ YKSVLSAVLK SSHQLVLGPH FQNSHQESSF TSWRRGGFVK CRTQRGGTPQ 420 KLLKKILLEV PQMHVDCVLE PPEDTSNVNE VCRPEADDID TNHALSERRR REKLNERFCI 480 LKSMVPSVSK EDKVSILDDT IEHLKDLEKR VEELESFWEL TNSDSKMKRK LQETVERTSD 540 NCCNPKISNG KKPIVYKRKA CDVDETEPEI NHIVSKNVSS DNITVNTNNK DVLIEMKFPW 600 REGVLLEIMD ATSRLHLDAH SVQSSTADGI LSLTIKSRFK GTSIASAGTI KQALDRFARS 660 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 466 | 471 | ERRRRE |
2 | 467 | 472 | RRRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with MYB75/PAP1, MYB90/PAP2 or TT2. Involved in epidermal cell fate specification. Regulates negatively stomata formation, but, in association with TTG1 and MYB0/GL1, promotes trichome formation, branching and endoreplication. Regulates also trichome cell wall maturation. Together with MYB66/WER, promotes the formation of non-hair cells in root epidermis cells in the N position. Whereas together with CPC, promotes the formation of hair cells in root epidermis cells in the H position by inhibiting non-hair cell formation. Seems also to play a role in the activation of anthocyanin biosynthesis, probably together with MYB75/PAP1. Activates the transcription of GL2. {ECO:0000269|PubMed:11063707, ECO:0000269|PubMed:12917293, ECO:0000269|PubMed:12956536, ECO:0000269|PubMed:14561633, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15590742}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr041336.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen deficiency and UV light. Negatively regulated by MYB66/WER, GL3 and BHLH2 in the developing non-hair cells, and positively regulated by CPC and TRY in the developing hair cells. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:15590742, ECO:0000269|PubMed:17053893}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009346743.1 | 0.0 | PREDICTED: transcription factor EGL1 | ||||
Swissprot | Q9FN69 | 0.0 | GL3_ARATH; Transcription factor GLABRA 3 | ||||
TrEMBL | A0A498JIJ8 | 0.0 | A0A498JIJ8_MALDO; Uncharacterized protein | ||||
STRING | XP_009346743.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2444 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41315.1 | 0.0 | bHLH family protein |