PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr041312.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 168aa MW: 18179.7 Da PI: 5.2749 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.1 | 5.5e-07 | 2 | 38 | 17 | 55 |
HHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 + f++L +l+P++ +s+ s + L Av+YIk+Lq Pbr041312.1 2 KALFSKLNSLVPHQ---RSGEaASLPDQLDDAVNYIKQLQ 38 6679*********7...56666*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.969 | 1 | 37 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-7 | 1 | 52 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-8 | 1 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MKALFSKLNS LVPHQRSGEA ASLPDQLDDA VNYIKQLQTN LEKMREKKDR LMGGIEKSTH 60 CNAGFGRCAG PITGGSPLVE IRETGSALEI QMITGLEYQF MFNESICVLH EEGADVVNAG 120 FSVVEDTVFH TIHSKIEELA PGCAAARISE KLNKKFVNDQ ADALGSI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr041312.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009346720.1 | 1e-122 | PREDICTED: uncharacterized protein LOC103938438 | ||||
TrEMBL | A0A498JTF3 | 1e-117 | A0A498JTF3_MALDO; Uncharacterized protein | ||||
STRING | XP_009346720.1 | 1e-121 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 2e-39 | bHLH family protein |