PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr041202.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 631aa MW: 71584.3 Da PI: 6.1233

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr041202.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	274.8	2.7e-84	265	628	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 + Ll++Ae v +++e+a++lL r + as + +p+qR+++ f+eAL++r+ + +++++yk + s+ s s++l++ + ++ P++ + +++a Pbr041202.1 265 AHILLAAAEKVGYQQFERANRLLLRCEFAASFKVNPVQRVVFNFAEALRERIEKeTGNSMYKGNEISSYSL-GLSTNLTFI-ACHQDIPFHPVLQFAA 360 699*************************************************77888888777777763.244444443.466778****** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 q Ile v+ e++vH iD++i G+QW L++ La+R+e p l iT+vg + k+++eetg+rLa++A++l+vpf+f+++++ ++ed++ + ++ Pbr041202.1 361 IQVILENVALERKVHLIDLEIRSGVQWTGLMEVLAEREECPIeLLTITAVGV---TGKQKIEETGRRLASVAKALNVPFQFKAVIVADMEDVKKQLFD 455 **********************************7665499***...68************************************* PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 v+ +Ea++V l l +l ++ +le+ +++++++lsP v+vv e ea+hns+sF++rf++al yysa+fd+lea + +++e r +Er l++ Pbr041202.1 456 VEDDEAVVVYAPLILRTLILRPSCLEN----LMRVMRNLSPCVMVVNEVEANHNSPSFVNRFIDALFYYSAFFDCLEACM-KHEESRLLMERL-LHEG 547 ***************99999999....*******************************************96.666778888887. PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 i+n+va+eg+er+ r+ ++e Wr+ + ++ + ++++s+ +qa+l+ +k++s +++ + ++l+ gWk+ p+ s+SaW+ Pbr041202.1 548 IRNIVAAEGSERVTRNVKMEVWRAFFARFRMVEINFSKASLNQASLVAKKFGSPSCTLHRNGKCLIVGWKGTPIHSLSAWK 628 **************************************************9***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	39.475	238	608	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.4E-82	265	628	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence Send to blast
MANAFFSFTP FDFGVVGGGG GLTRQLEDYE KEDQEVVVFK GKPEHLFGME ELGLGEMEKF 60 SHLSKDQPQS KTSYSMLDNF SFDTVCSEHD LQRSNNMSEK ELDHVSKDHD HRHYQQQNQR 120 CQQQSKSNYS DLDNFNFDSP FHSTQPIQDM ANQLTYSQIG GSDIAETNKQ MPHQSSLAVL 180 ELLNNYGSAF KKLKRDRFSN SCNEAGASSY SIQQKLSTEE IMRVAGARYV QFSNQGYDDF 240 FMPLHPFGYA LSGLSEEETK DVELAHILLA AAEKVGYQQF ERANRLLLRC EFAASFKVNP 300 VQRVVFNFAE ALRERIEKET GNSMYKGNEI SSYSLGLSTN LTFIACHQDI PFHPVLQFAA 360 IQVILENVAL ERKVHLIDLE IRSGVQWTGL MEVLAEREEC PIELLTITAV GVTGKQKIEE 420 TGRRLASVAK ALNVPFQFKA VIVADMEDVK KQLFDVEDDE AVVVYAPLIL RTLILRPSCL 480 ENLMRVMRNL SPCVMVVNEV EANHNSPSFV NRFIDALFYY SAFFDCLEAC MKHEESRLLM 540 ERLLHEGIRN IVAAEGSERV TRNVKMEVWR AFFARFRMVE INFSKASLNQ ASLVAKKFGS 600 PSCTLHRNGK CLIVGWKGTP IHSLSAWKFR *

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence Send to blast

MANAFFSFTP FDFGVVGGGG GLTRQLEDYE KEDQEVVVFK GKPEHLFGME ELGLGEMEKF  60
SHLSKDQPQS KTSYSMLDNF SFDTVCSEHD LQRSNNMSEK ELDHVSKDHD HRHYQQQNQR  120
CQQQSKSNYS DLDNFNFDSP FHSTQPIQDM ANQLTYSQIG GSDIAETNKQ MPHQSSLAVL  180
ELLNNYGSAF KKLKRDRFSN SCNEAGASSY SIQQKLSTEE IMRVAGARYV QFSNQGYDDF  240
FMPLHPFGYA LSGLSEEETK DVELAHILLA AAEKVGYQQF ERANRLLLRC EFAASFKVNP  300
VQRVVFNFAE ALRERIEKET GNSMYKGNEI SSYSLGLSTN LTFIACHQDI PFHPVLQFAA  360
IQVILENVAL ERKVHLIDLE IRSGVQWTGL MEVLAEREEC PIELLTITAV GVTGKQKIEE  420
TGRRLASVAK ALNVPFQFKA VIVADMEDVK KQLFDVEDDE AVVVYAPLIL RTLILRPSCL  480
ENLMRVMRNL SPCVMVVNEV EANHNSPSFV NRFIDALFYY SAFFDCLEAC MKHEESRLLM  540
ERLLHEGIRN IVAAEGSERV TRNVKMEVWR AFFARFRMVE INFSKASLNQ ASLVAKKFGS  600
PSCTLHRNGK CLIVGWKGTP IHSLSAWKFR *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-36	272	630	27	381	Protein SCARECROW
5b3h_A	5e-36	272	630	26	380	Protein SCARECROW
5b3h_D	5e-36	272	630	26	380	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr041202.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009346627.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A498IMH3	0.0	A0A498IMH3_MALDO; Histone-lysine N-methyltransferase
STRING	XP_009346627.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	6e-50	RGA-like 1