PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr041135.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | YABBY | ||||||||
Protein Properties | Length: 232aa MW: 25948.3 Da PI: 8.401 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 242.5 | 8.3e-75 | 19 | 194 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee........lleelkveeenlksnvekees 91 ++ s ++q+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhC++llsvn++ ll+ ++ ++ ++ llee +++ +n+ +n++ + + Pbr041135.1 19 HLLSPTDQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCSNLLSVNMRAL--LLPPPNNNNQLHLPHpffstphnLLEEIRNTPSNTITNHQPNYT 114 567899****************************************776655..55555544455555567776666777777777777666666666 PP YABBY 92 astsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ ++ ++++e+p++p v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl Pbr041135.1 115 NESAMPIRGGRFDHHQEIPKPPAvVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 194 6666666666999*******99989*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.0E-73 | 23 | 194 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.83E-8 | 132 | 187 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 8.5E-5 | 142 | 188 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MSSAATSSTV FNSPDQQQHL LSPTDQLCYV HCNFCDTVLA VSVPCSSLFK TVTVRCGHCS 60 NLLSVNMRAL LLPPPNNNNQ LHLPHPFFST PHNLLEEIRN TPSNTITNHQ PNYTNESAMP 120 IRGGRFDHHQ EIPKPPAVVN RPPEKRQRVP SAYNRFIKEE IQRIKAGNPD ISHREAFSAA 180 AKNWAHFPHI HFGLLPDQPV KKTNIRQQEG DDVLMKDGFF STPANVGVFP Y* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr041135.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009346562.1 | 1e-173 | PREDICTED: axial regulator YABBY 3-like | ||||
Swissprot | O22152 | 2e-87 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
TrEMBL | A0A498KES2 | 1e-168 | A0A498KES2_MALDO; Uncharacterized protein | ||||
STRING | XP_009346562.1 | 1e-172 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2040 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-85 | YABBY family protein |