PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040956.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Dof
Protein Properties Length: 305aa    MW: 33602.9 Da    PI: 7.1081
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040956.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1291.4e-4039100263
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                  +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss
  Pbr040956.1  39 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 100
                  7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.6E-344197IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-274297IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.6464397IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104581IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDPASGQQQH QEMSAESLDM LVCSKSQQQQ QDRKPRPQPE QALKCPRCDS TNTKFCYYNN  60
YSLSQPRYFC KSCRRYWTKG GTLRNVPVGG GCRKNKRSSS TKRAQDQPLT PNSNPLPALG  120
YDSNDLTLAF ARLQRQQSCG GQLGFDDHDH ITLLGNPTNA PDHNILGNPT SAPGFLDALR  180
TGFLETHNGN FQNLYNYGYG NGNGNLGEVE DCGGGMGIHH PFEEATTNST TTAVTVTTMK  240
QELFNGQSES SNRVLWGFPW QMNGGDHHSN MVGNGNHEYD SGRESWNGIA SSWQHGLLHT  300
TPLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040956.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346579.10.0PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBLD9ZIX60.0D9ZIX6_MALDO; DOF domain class transcription factor
STRINGXP_009346579.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50263051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.14e-49Dof family protein