PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr040944.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 251aa MW: 29198.4 Da PI: 8.9871 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.1 | 2.8e-07 | 83 | 127 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er RR++ ++++ L ++lP ++++K i+++A+ I++L Pbr040944.1 83 HMINERMRREKQKHSYLALHSMLPAG-----TRNDKNRIVQMATMNIQQL 127 7899********************97.....7****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-9 | 74 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.842 | 78 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.10E-4 | 82 | 132 | No hit | No description |
Pfam | PF00010 | 2.4E-4 | 83 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.2E-6 | 83 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0057 | 84 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDRYILKALE GEFLWYDESP PVVQNQSAFV PYTNRPNSNQ LPNGVTKSMN MTMRMLQFLR 60 KSWQPATARN EAGDDSKERG FRHMINERMR REKQKHSYLA LHSMLPAGTR NDKNRIVQMA 120 TMNIQQLKRS EEELRKKNME LETLLVENEK ERVKRAKIKL KVANPTSGID SMLEVLKCLQ 180 HLGLKARNIS SNFSLEEFSA ELEIESKIGA AEIEEYVQET LYEAERKLRF PFPGSREEYC 240 ASIDTPFRFD * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr040944.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009346437.1 | 0.0 | PREDICTED: transcription factor bHLH92-like | ||||
TrEMBL | A0A498I7U9 | 1e-136 | A0A498I7U9_MALDO; Uncharacterized protein | ||||
STRING | XP_009346437.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12572 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 8e-42 | bHLH family protein |