PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040795.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 590aa    MW: 66155.6 Da    PI: 4.408
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040795.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.23.1e-5391361128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  l+pGfrFhPtdeelv++yLk+kv+gk++++ + i+ +diyk+ePwdLp k k+k+++ ewyfFs  dkky +++r+nrat++gyWk+tgkd+++++ +
  Pbr040795.1   9 LAPGFRFHPTDEELVWYYLKRKVSGKNFRF-DPISVIDIYKTEPWDLPgKsKLKTRDLEWYFFSFLDKKYGNSSRTNRATEKGYWKTTGKDRPIKH-N 104
                  579**************************9.99***************5347777888**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++vg+kktLvf++grap+g +t+Wvmheyrl
  Pbr040795.1 105 SRDVGMKKTLVFHSGRAPTGARTNWVMHEYRL 136
                  99****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.23E-606160IPR003441NAC domain
PROSITE profilePS5100557.4429160IPR003441NAC domain
PfamPF023656.7E-2811136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MARGKENSLA PGFRFHPTDE ELVWYYLKRK VSGKNFRFDP ISVIDIYKTE PWDLPGKSKL  60
KTRDLEWYFF SFLDKKYGNS SRTNRATEKG YWKTTGKDRP IKHNSRDVGM KKTLVFHSGR  120
APTGARTNWV MHEYRLSNEE LEKAGIQQKD PYVLCRIFQK SGTGPKNGEK YGAPVMEEEW  180
DDDDVTCVPG EEAAANVVAV SEEPDNEAMD VNNGAYVEAF DLDQNLDTGI LSESALPPLN  240
FYHGETSNYI EHYGDFVEDD TKAVMGTGET SEYCEHQMFF GYPEHYETVG NPVKNEYITS  300
QNPEDLKFVD LTEHYEADAR PVKDECFLEP SDGANPSVVN YSLNEPYLDA TENKPFGDGL  360
FLETNDLSNP VESTAGFDML DEYLTYFDAN DDISQYIDFD SCGYVPDQGP SDQKLLNGET  420
ELQPMGGEHL VQPEDTDDAS LTKKMPECKF ESDGNYPFIK KASHMMLGSI PAPPAFASEF  480
PAKEAMLRLN SGASSSSSVH VTAAMIRIRD ITSSDNRMDW SFGKDGVVNL VFSVQLSQND  540
GNSGNLVPVG GSLSGKTGCV VMRGWFLFMF LWVLFLSMSY KIGSYICTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-45616012168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040795.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361439.10.0PREDICTED: NAC domain-containing protein 53-like
TrEMBLA0A498JIA90.0A0A498JIA9_MALDO; Uncharacterized protein
STRINGXP_009361439.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53473247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-131NAC domain containing protein 2