PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040759.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 289aa    MW: 32127.2 Da    PI: 6.9493
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040759.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.4e-1487129754
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++ r RR+++N++f++Lr l+P++     +K++Ka+i+  A++YI++L
  Pbr040759.1  87 AINRGRRQQLNDKFFTLRNLIPNP-----TKNDKASIVGDAIDYINEL 129
                  688*********************.....9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.73580129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-1186135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.64E-1486148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-1187129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1287138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.10E-1190133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MASSVLYDPL LHLNLPPQPP LFRESPQSLP HGYTLPGSGN GSLFSSGGDE KEGSGGGIYP  60
DDGFMEFSRE MGSIGRGRNL EESKNLAINR GRRQQLNDKF FTLRNLIPNP TKNDKASIVG  120
DAIDYINELL RTVDELKLLV EKKRCGRERI KRHKTEQDGG APGDDENCNI KPLGERHDHS  180
YNNGSLRSSW LQRKSKYTDV DICIIEDEVT IKLVQRKKIN LLLFVSRLLD ELQLDLHHVA  240
GGHIGNSYSF LFNTKMYEGS CLYASAIAGK FIEVLDGQYS AVPPTGSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040759.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009373826.21e-175PREDICTED: transcription factor bHLH10-like
RefseqXP_009373851.21e-175PREDICTED: transcription factor bHLH10-like
SwissprotQ84TK12e-81BH010_ARATH; Transcription factor bHLH10
TrEMBLA0A498KLS31e-170A0A498KLS3_MALDO; Uncharacterized protein
STRINGXP_008345255.11e-176(Malus domestica)
STRINGXP_008354804.11e-176(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.11e-77bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]