PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr040536.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

SRS

Protein Properties

Length: 357aa MW: 38801.8 Da PI: 7.241

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr040536.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	213.8	4.1e-66	115	277	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrel...........kskkqsa 85 g+asCqdCGnqakkdC h+RCRtCCk+rg++C thvkstWvpa+krrerqqqlaa+++++ +++ + + ++++ + ++ s+ Pbr040536.1 115 GGASCQDCGNQAKKDCIHMRCRTCCKNRGLHCPTHVKSTWVPASKRRERQQQLAALQHQHHQHQghiqqH--HDQQQQ-QlqvirgesskrLRENPSS 209 779***************************************************99988887766431..222222.1345666665554455566 PP DUF702 86 lsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s ++ ++++++ l++ ++P+evss+avfrcv+vs++d+ e+++aYqtav+i+Gh+fkGiLydqG+e+ Pbr040536.1 210 NPSLRILTNTNTSGLDVVNFPPEVSSPAVFRCVKVSAMDN-EDQYAYQTAVNIAGHLFKGILYDQGPES 277 6666666777777888888***************97.579********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.4E-63	116	276	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.4E-26	118	160	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.6E-26	229	275	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MAGFFSLGRG GSDDQDNSNN PPPPDHHNHH QIAPETLFWY KNEDVANQPY KGFELWQQQE 60 QLLQLQTQPP PPLYQPQSWV GPSSRGSDDT SSSRSATAGF TMMRSSSGGR GGSGGGASCQ 120 DCGNQAKKDC IHMRCRTCCK NRGLHCPTHV KSTWVPASKR RERQQQLAAL QHQHHQHQGH 180 IQQHHDQQQQ QLQVIRGESS KRLRENPSSN PSLRILTNTN TSGLDVVNFP PEVSSPAVFR 240 CVKVSAMDNE DQYAYQTAVN IAGHLFKGIL YDQGPESPNY NMNMAADTSS GGGVNFQPLN 300 LIAGAATTVN TASIDGGGGH EGVEVAGSTT VIDPSSLYPA PINTYMGTQF FLPPRS*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MAGFFSLGRG GSDDQDNSNN PPPPDHHNHH QIAPETLFWY KNEDVANQPY KGFELWQQQE  60
QLLQLQTQPP PPLYQPQSWV GPSSRGSDDT SSSRSATAGF TMMRSSSGGR GGSGGGASCQ  120
DCGNQAKKDC IHMRCRTCCK NRGLHCPTHV KSTWVPASKR RERQQQLAAL QHQHHQHQGH  180
IQQHHDQQQQ QLQVIRGESS KRLRENPSSN PSLRILTNTN TSGLDVVNFP PEVSSPAVFR  240
CVKVSAMDNE DQYAYQTAVN IAGHLFKGIL YDQGPESPNY NMNMAADTSS GGGVNFQPLN  300
LIAGAATTVN TASIDGGGGH EGVEVAGSTT VIDPSSLYPA PINTYMGTQF FLPPRS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	115	GGRGGSGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr040536.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009346290.1	0.0	PREDICTED: protein SHORT INTERNODES-like
Swissprot	Q9XGX0	3e-76	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A498KGF0	0.0	A0A498KGF0_MALDO; Uncharacterized protein
STRING	XP_009346290.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	3e-63	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]