PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040479.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bZIP
Protein Properties Length: 158aa    MW: 17900 Da    PI: 5.2667
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040479.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.41.3e-123088563
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                 ++ +r+ +NRe+ArrsR RK++ +  L+  +  L+  N + +  ++  ++++ kl++e+
  Pbr040479.1 30 RKRKRMLSNRESARRSRMRKQEHMTDLTAQIGLLTRDNNQIITSMNVTNQLYMKLEAEN 88
                 67899************************************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.7E-1124109No hitNo description
SMARTSM003382.5E-142690IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.8412891IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.04E-123083No hitNo description
PfamPF001704.0E-103088IPR004827Basic-leucine zipper domain
CDDcd147028.28E-153182No hitNo description
PROSITE patternPS0003603348IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MASSSGVSSE SSKLQNSGSD EDLNQVMDQR KRKRMLSNRE SARRSRMRKQ EHMTDLTAQI  60
GLLTRDNNQI ITSMNVTNQL YMKLEAENSV LRAQMDELRN RLQSLNDIMD CINSSKWIYE  120
EEDNHNNIGG GDGFLNPWSA GFLNNQPIMA SADMFMC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14249RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040479.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346044.11e-113PREDICTED: bZIP transcription factor 11-like isoform X1
RefseqXP_009346045.21e-113PREDICTED: bZIP transcription factor 11-like isoform X2
RefseqXP_018500633.11e-113PREDICTED: bZIP transcription factor 11-like isoform X1
SwissprotC0Z2L54e-45BZP44_ARATH; bZIP transcription factor 44
TrEMBLD9ZIQ22e-99D9ZIQ2_MALDO; BZIP domain class transcription factor
STRINGXP_009346044.11e-112(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.18e-47basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]