PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040284.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 374aa    MW: 40158.5 Da    PI: 6.5835
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040284.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.001787106221
                  EETTTTEEESSHHHHHHHHH CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                  +C+ Cgk+F ++  L  H+r
  Pbr040284.1  87 PCTECGKTFWSWKALFGHMR 106
                  5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.72386113IPR007087Zinc finger, C2H2
SMARTSM003550.01786108IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.17E-887108No hitNo description
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
PfamPF139121.7E-788110IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.1E-488108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.17E-8194221No hitNo description
PfamPF139121.2E-9198222IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.242199226IPR007087Zinc finger, C2H2
SMARTSM003550.47199221IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280201221IPR007087Zinc finger, C2H2
PfamPF139121.5E-11273297IPR007087Zinc finger, C2H2
SuperFamilySSF576671.93E-5273298No hitNo description
SMARTSM003550.034273295IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245273295IPR007087Zinc finger, C2H2
PROSITE patternPS000280275295IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MNNTPDLDFR FPISPPTHQD AVVPAPATAY AASSSFTCFT ANERTHQNPR KKRSKLIRLD  60
NPTALNKVSR PKYAKKPDPS APKITKPCTE CGKTFWSWKA LFGHMRCHPE RQWRGIEPPP  120
NLRRPALSNI PLSELGLAMG EEDHEAASSL LMLSSGITSG TSNEIIISTA ATQSVSNTSN  180
LQGALEVFDG CNSNNSGRFE CSSCKKVFGS HQALGGHRAS HKNVKGCFAI TRSDGEVDQD  240
HHHHNGDGGD DDGDGDEDVM DEDHMDLGSS LGHKCSVCWR VFSSGQALGG HMRCHWDKGD  300
ETQLGLGFEL GFGFNLQHPC ETSKGLLLGQ NSGGGAGLDL NLSAAAASAS HTTEDDHQHY  360
SSSGLTLDLR LGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040284.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028965043.10.0zinc finger protein ZAT3
TrEMBLA0A498IWK00.0A0A498IWK0_MALDO; Uncharacterized protein
STRINGXP_009345932.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF6667710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.15e-74C2H2-like zinc finger protein