PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr040090.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Dof

Protein Properties

Length: 317aa MW: 34474.6 Da PI: 8.1434

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr040090.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.3	3.3e-38	34	94	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++al+cprC+st tkfCyynnyslsqPryfCk+C+ryWt+GG+lrnvPvGgg+rkn+k+s Pbr040090.1 34 KDQALNCPRCNSTTTKFCYYNNYSLSQPRYFCKTCKRYWTEGGSLRNVPVGGGSRKNNKRS 94 7899*****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	27	86	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-32	35	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.491	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MDTAHWPQGI GVVKSMEDFS STRPNTEKRA RPQKDQALNC PRCNSTTTKF CYYNNYSLSQ 60 PRYFCKTCKR YWTEGGSLRN VPVGGGSRKN NKRSNNSDSS SPSTSSAKKV AYDRDHHLTP 120 HGNFPPQSAS QNPNKIHFQG QDLNLAYPTA DQDYDNNNIT KLSFSIDNKT YHPNPSSSGT 180 TTTSHHFSSA MELLTSTGIA SRGLTSFVPM AAAAVPDHSN NITMFSAGFP MQEFKPSGLS 240 FSLDGFESAG YGGCLQGVQE NTTSHARVLF PTDQDFKQQI PSSTTTAAEF DQHNNRGGEG 300 DSGGGYWNGM LGGGSW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr040090.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009361330.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like
TrEMBL	A0A498JK95	0.0	A0A498JK95_MALDO; Uncharacterized protein
STRING	XP_009361330.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	4e-39	Dof family protein