PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040028.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 542aa    MW: 60182.8 Da    PI: 5.2776
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040028.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.12.4e-5191361128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lp GfrF+Ptd el+++yL+ k++g++ ++  vi+e+d++k ePwdLp  + +++++ ew+fF+++d+ky++g+r nrat +gyWkatgkd++++s +
  Pbr040028.1   9 LPLGFRFRPTDAELIDYYLRSKINGNHRQV-AVIREIDVCKREPWDLPdlSVIQTTDPEWFFFCPQDRKYPNGHRLNRATIKGYWKATGKDRQIKS-D 104
                  699************************999.89**************96447778888**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  + l+g+kktLvf++grapkg++t+Wvmheyr 
  Pbr040028.1 105 KILIGMKKTLVFHTGRAPKGKRTNWVMHEYRT 136
                  9*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-594159IPR003441NAC domain
PROSITE profilePS5100554.8499159IPR003441NAC domain
PfamPF023651.3E-2610135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002230Biological Processpositive regulation of defense response to virus by host
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MEVLSMNSLP LGFRFRPTDA ELIDYYLRSK INGNHRQVAV IREIDVCKRE PWDLPDLSVI  60
QTTDPEWFFF CPQDRKYPNG HRLNRATIKG YWKATGKDRQ IKSDKILIGM KKTLVFHTGR  120
APKGKRTNWV MHEYRTTQKE LDGTNPGQSS FVLCRLFKKQ DETIEDSNFD EAEPTVSSSI  180
AVASSPLDVQ SGLAPVPTSP SFERPDEKPL TKVECTFADS GNAMASDTLP PLPTIEFPSN  240
SCDGYDAEGQ LNMPLGELDM FYDPPQQPLF SPLHSQMHAE LGYYGRNDFS NVHQGVTFPH  300
GTNEQDAYVS EFLSSILNSS GEQIDVDASA AEVQFLKELQ NDVQPGENIV RNDPSLLMSI  360
PEDYGQSSRS EVTSNHLNAI INRDAGTGIK LRARQTQNPT SAESFVTQGD AKRRIRLATK  420
VQRLQCSSRP EDNELKPIAL EEISKNEKKP IGAVDTDVIS ADIDPPENGT VPTRPNFTTD  480
GSIVTGKRLL SVLLKAVSPA GHSMWSLAFL FIGVVVAFLF IILLAHGDFI SFEATRRPFA  540
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-44416012166NO APICAL MERISTEM PROTEIN
1ut4_B3e-44416012166NO APICAL MERISTEM PROTEIN
1ut7_A3e-44416012166NO APICAL MERISTEM PROTEIN
1ut7_B3e-44416012166NO APICAL MERISTEM PROTEIN
4dul_A3e-44416012166NAC domain-containing protein 19
4dul_B3e-44416012166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr040028.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361256.10.0PREDICTED: NAC domain-containing protein 91-like isoform X1
TrEMBLD9ZJ910.0D9ZJ91_MALDO; NAC domain class transcription factor
STRINGXP_009361256.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.21e-104TCV-interacting protein