PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr040002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | LBD | ||||||||
Protein Properties | Length: 235aa MW: 26438.8 Da PI: 9.0133 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.2 | 8.4e-36 | 16 | 114 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++r+kC ++C+lapyfp++++++f +vhk+FG+snv+k++k+++e +r+++++slv+eA +r++dPv Ga+g ++ ++ +l++ k++ ++ + Pbr040002.1 16 ACAACKHQRKKCHAGCILAPYFPSDRTREFLAVHKVFGVSNVTKMVKNVEEPNRRKVAESLVWEALCRQKDPVLGAYGEYRMVSDELKRYKQQQNREN 113 7******************************************************************************************9988766 PP DUF260 99 e 99 + Pbr040002.1 114 H 114 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.348 | 15 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-34 | 16 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MQRTNNNGTA GSTQPACAAC KHQRKKCHAG CILAPYFPSD RTREFLAVHK VFGVSNVTKM 60 VKNVEEPNRR KVAESLVWEA LCRQKDPVLG AYGEYRMVSD ELKRYKQQQN RENHTVPLQV 120 QKGLCFNKSL SDLVGNWNGG ITNGITNVNN SGYLRDNDDV IPDSAPFGYP LNCEQQSHEK 180 VVKQVKMVDS VVVPLHQQQQ HYSVNNINQR YYLTGQFNEI IGKRIEGTIW EGGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-22 | 9 | 110 | 5 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-22 | 9 | 110 | 5 | 105 | LOB family transfactor Ramosa2.1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr040002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008377048.1 | 1e-169 | LOB domain-containing protein 2-like | ||||
TrEMBL | A0A498JIH2 | 1e-168 | A0A498JIH2_MALDO; Uncharacterized protein | ||||
STRING | XP_008377048.1 | 1e-169 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12722 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 8e-43 | LOB domain-containing protein 2 |