PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr039686.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 211aa MW: 23129.1 Da PI: 10.4777 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.8 | 1.3e-10 | 46 | 92 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e E+rRR riN + +Lr +lP + K++Ka++L ++v+ +++L Pbr039686.1 46 KKHSESEKRRRMRINGQYTTLRAILPDL-----IKMDKASVLGETVRKVREL 92 68*************************9.....6************988877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.77E-12 | 35 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.579 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-8 | 46 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.72E-9 | 46 | 97 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.1E-11 | 47 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-9 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 6.98E-5 | 136 | 197 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 9.3E-6 | 137 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MQSTLSYYPK QISFPKGQGV FPTNNIYNKN FFKPKSKAEA KVIAAKKHSE SEKRRRMRIN 60 GQYTTLRAIL PDLIKMDKAS VLGETVRKVR ELKKALAEVE AACHCGDRRD ECVLPGGVDK 120 LSVEQCEGEK GGLVKATFSC EDRLGLISDM TRALSCVKGR VVRAEMVTVG GRSKNALWVQ 180 GLGGGNEGVV ALKRALKVVI DRPVLPRNII * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr039686.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008235541.1 | 1e-117 | PREDICTED: transcription factor bHLH131-like | ||||
TrEMBL | A0A498HTJ4 | 1e-139 | A0A498HTJ4_MALDO; Uncharacterized protein | ||||
STRING | XP_009345719.1 | 1e-151 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12611 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38070.1 | 1e-38 | bHLH family protein |