PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr039459.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ARR-B | ||||||||
Protein Properties | Length: 580aa MW: 64780.9 Da PI: 6.7489 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 83.8 | 1.8e-26 | 316 | 370 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH++Fv+a+eqL G ++A+P++i++lmk +gLt+++v+SHLQkYR++ Pbr039459.1 316 KMKVDWTPELHKKFVKAIEQL-GVDQAIPSRIVDLMKTEGLTRHNVASHLQKYRMH 370 5689*****************.********************************96 PP | |||||||
2 | Response_reg | 32.4 | 4.7e-12 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGa 94 vl+ d + + ++ +r le +y +v+++ + +eal + + +++ ++ ++ + G+++l++ +e lpii+ + +++ +++ +Ga Pbr039459.1 20 VLLLDGDTTSASQIRLNLEAMDY-IVTAFCNETEALSAFSSNPesFHVAIIEVNANNgHWGFQFLETAKE----LPIIMTSNIHCLSTMMKCIALGA 111 7888999999999**********.***************777777**********99899**99998766....77888887777************ PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 +fl Kp+++++l++ Pbr039459.1 112 VEFLLKPVSEDKLRN 126 ************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 5.0E-17 | 16 | 159 | No hit | No description |
SuperFamily | SSF52172 | 3.98E-17 | 16 | 134 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.0E-5 | 18 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 21.543 | 19 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.6E-8 | 20 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.60E-9 | 21 | 131 | No hit | No description |
PROSITE profile | PS51294 | 14.03 | 313 | 372 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-25 | 314 | 372 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.81E-17 | 315 | 373 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-23 | 316 | 371 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.6E-7 | 319 | 368 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 580 aa Download sequence Send to blast |
MVCTANDLQQ WNDFPKGLRV LLLDGDTTSA SQIRLNLEAM DYIVTAFCNE TEALSAFSSN 60 PESFHVAIIE VNANNGHWGF QFLETAKELP IIMTSNIHCL STMMKCIALG AVEFLLKPVS 120 EDKLRNIWQH VVHKAFNAGG SPISETLKPV KVSVVSMLQP KQENEEQNCK ISIETENIIR 180 VHENDQEQSA GSDKYPAPST PQIKQGSRLL DHGDCQYQIN CMSEKVSGEN DSEAKSIETM 240 FCNPIDERNL HTREPHHMPR KTVIKEENDS GDGSKSEVNM SHHPDNIDSG NDNGGAAENL 300 SKASVPNTSC KSNRKKMKVD WTPELHKKFV KAIEQLGVDQ AIPSRIVDLM KTEGLTRHNV 360 ASHLQKYRMH KRHILPKDED QRLLWPHHPP GARDPTHQTS YYPRSHRPIM AFPPYHYNNT 420 TLSMPPAYPM WGSQPPAGSH PATVQMGGQP GYPHSYWQLS DQSWQYWNPY PGMQAEAWGC 480 PVMPPEQGGY SSYPQNASGF RSAGGHVVEN GHRYSMPRNS FNIHLSEDVV DKVMKEAISK 540 PWLPLPLGLK PPSTEGVLAE LTRQGICNIP QINGSHTQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-15 | 314 | 369 | 3 | 58 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr039459.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018500549.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_018500550.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Swissprot | Q6LA43 | 1e-139 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A498HIV6 | 0.0 | A0A498HIV6_MALDO; Uncharacterized protein | ||||
STRING | XP_009345638.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009345641.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3566 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-143 | ARR-B family protein |
Publications ? help Back to Top | |||
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