PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr039170.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 296aa    MW: 32063.6 Da    PI: 6.8789
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr039170.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08173225455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P + k + +    Ka +L + ++Y++sLq
  Pbr039170.1 173 SHSLAERARREKISERMKILQDLVPGCNKVRYGMvIGKALVLDEIINYVQSLQ 225
                  8*************************76555555599***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.51E-8167229No hitNo description
SuperFamilySSF474597.33E-16167243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.97169224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-16169242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-6173225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-8175230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDPPTLVNEC LFPNANATSF NLSEIWEFPM NGSGASAGDS GGELGLRRPN FSQSFAQFGD  60
VSGAIRDVLA DSDPNTMSLD HRGNHGGGHG GASRKRRDAD AESPKSSGHI GASDCDGKRL  120
KASPRCRDES ARESKAEAET SSGKPAEPNA QPPDPPKQDY IHVRARRGQA TDSHSLAERA  180
RREKISERMK ILQDLVPGCN KVRYGMVIGK ALVLDEIINY VQSLQRQVEF LSMKLEAVNT  240
RMNPGIEAFP SKEFGQQAFD AASMAFGTQP QRDYSRGNSP EWLHMQVGGG FDRAT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr039170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360425.10.0PREDICTED: transcription factor bHLH79
SwissprotQ69WS39e-74BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A498IC900.0A0A498IC90_MALDO; Uncharacterized protein
STRINGXP_009360425.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-89BIG PETAL P