PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr039067.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 352aa    MW: 37885.5 Da    PI: 5.6597
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr039067.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.12.1e-17254287134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Pbr039067.1 254 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 287
                  99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.2E-754339IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.424248284IPR000679Zinc finger, GATA-type
SMARTSM004019.3E-17248298IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15252311No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14252285IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.69E-14253300No hitNo description
PROSITE patternPS003440254279IPR000679Zinc finger, GATA-type
PfamPF003204.4E-15254287IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MMGPSFIDDI DCGSLFDTID DLLDFPTDDV ESALGPTPDC DAAFNSSSPW PSQSGSLQPP  60
NEAVFSGNSA SDLSAELDVP IEDIVQLEWL SNFCEDSFSG GSLTINKPDN PFVNNESSHQ  120
QFQTSSPISV LDSSSSCSVE KNVPQSPGQV VPGKRGRARS KRPRPATFNP RPAIQLISPA  180
SSVTEAEALQ HQPLLPLKVH SDSENFAESR PVIKIPKQAS GEQKKKKKIK LTIPQAPAEG  240
NQSSGTTQGA VRKCLHCEIT KTPQWRAGPM GPKTLCNACG VRYKSGRLFP EYRPAASPTF  300
VPALHSNSHK KVLEMRNKGG ELVPFGETTT AMTETPELIP NANHSISLDY M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160164KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr039067.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4525082e-57AM452508.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X231684.10, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009345388.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLA0A498JKE40.0A0A498JKE4_MALDO; GATA transcription factor
STRINGXP_009345388.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-57GATA family protein