PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr038584.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 401aa MW: 45925.9 Da PI: 5.9089 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.4 | 8.2e-51 | 16 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPt+eel+++yL+kkv+ ++++l +vi+evd++k+ePwd+++++k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++s Pbr038584.1 16 VPPGFRFHPTEEELLHYYLRKKVAFERIDL-DVIREVDLNKLEPWDIQERCKIgstPQNDWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKIIYS- 111 69****************************.9***************964444222455**************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +gl+ktLvfykgrap+g+k+dW+mheyrl Pbr038584.1 112 GFKRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL 144 9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-57 | 10 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.344 | 16 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-26 | 17 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MSDDQMSLSI NGQSQVPPGF RFHPTEEELL HYYLRKKVAF ERIDLDVIRE VDLNKLEPWD 60 IQERCKIGST PQNDWYFFSH KDKKYPTGTR TNRATTAGFW KATGRDKIIY SGFKRIGLRK 120 TLVFYKGRAP HGQKSDWIMH EYRLDESNTH ETTVSSSMGE SMTEDGWVVC RVFKKKNYQK 180 ALESPKASFS MDSSNNQMNG SRNDGVLDQI LMYMGRTTCK LENHDQSLTM NNISERFMHL 240 PRLESPTLPN LPAFDQERSF KACYSAIDDM FIETEPSSTN QPSNGCDNND LVDDHEYPKT 300 RLNDWATLDR LVASQLGQLN GQDPETPKHL SCFGDPNMAF CSSPHPNDQD NDVQLSYPYL 360 RTSRSSDHQS EVYNNENDLW NFTKSSSSPS SSDPLCHLSV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-50 | 16 | 177 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr038584.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009360199.1 | 0.0 | PREDICTED: NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-114 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | D9ZJA5 | 0.0 | D9ZJA5_MALDO; NAC domain class transcription factor | ||||
STRING | XP_009360199.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3031 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-106 | NAC family protein |