PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038574.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 378aa    MW: 41828.3 Da    PI: 6.7887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038574.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.7e-12202247454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N +f  Lr ++P+       +++Ka+ L  Av YI++L
  Pbr038574.1 202 NHVEAERQRREKLNRRFYALRAVVPNV-----SRMDKASLLSDAVVYINEL 247
                  799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.4E-235104IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.35E-13196252No hitNo description
SuperFamilySSF474593.66E-17196263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.393198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-16202260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-9202247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-14204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDLDGGDVTD AEWFYFYTVS LTQSFTAGHG NSNILGRTFC SGGFVWLAGD HELQFYECER  60
VKKARMHGIQ TLVCIATSCG VLELASLDAI KVDWGLVQIS KSLFGSKNNN NMVSKQLSSS  120
REDHVLVPLL ESGMLSEAEQ RDWTTQGGTK EVPPVTIGGS SSDSGPSDSV GNFTSENMEN  180
IRLKKRGRSS NRETGRSETP INHVEAERQR REKLNRRFYA LRAVVPNVSR MDKASLLSDA  240
VVYINELKAR VEQLEAKIQA QHLKPVVDIG GQTTSSIIDH HQTRPRLSSS YDNKAAGVME  300
IDVKIVGSEA MIRVQCPDCD YPNARLMNAL KDLELQVYHA SISSVKGLML QDVVARVPQG  360
FTSEEALRIA IINRWYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-25195272281Transcription factor MYC2
5gnj_B1e-25195272281Transcription factor MYC2
5gnj_E1e-25195272281Transcription factor MYC2
5gnj_F1e-25195272281Transcription factor MYC2
5gnj_G1e-25195272281Transcription factor MYC2
5gnj_I1e-25195272281Transcription factor MYC2
5gnj_M1e-25195272281Transcription factor MYC2
5gnj_N1e-25195272281Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182188LKKRGRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr038574.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360191.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A498JRF50.0A0A498JRF5_MALDO; Uncharacterized protein
STRINGXP_009360191.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.16e-54NACL-inducible gene 1